miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 50090 0.66 0.740517
Target:  5'- gCGCGuGCUggcCGUGGUgGAcgaccccCGGGGGcCc -3'
miRNA:   3'- gGCGCuCGA---GCACCAgCU-------GCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 5690 0.66 0.767002
Target:  5'- gCCGgGGGuCUCccagggccacgGGggGGCGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGca---------CCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 44594 0.66 0.759779
Target:  5'- cCCGCGAcaggugguGCUCGUGGcccgCGuccuCGuGGGGa- -3'
miRNA:   3'- -GGCGCU--------CGAGCACCa---GCu---GC-CCCCag -5'
21503 3' -60.7 NC_004812.1 + 30800 0.66 0.750658
Target:  5'- gCCGCGGGC-CGaGGgccCcACGGGGGg- -3'
miRNA:   3'- -GGCGCUCGaGCaCCa--GcUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 56839 0.66 0.750658
Target:  5'- gCGCGuacucgaggagcAGCUCcagGGUCaccgaGAgGGGGGUCa -3'
miRNA:   3'- gGCGC------------UCGAGca-CCAG-----CUgCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 122233 0.66 0.732142
Target:  5'- gCGCGgggGGCUCGgcggcgGGgcgCgGGCGGGGGg- -3'
miRNA:   3'- gGCGC---UCGAGCa-----CCa--G-CUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 830 0.66 0.750658
Target:  5'- cCUGgGGGUcCGgGGUgGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAgCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 69776 0.66 0.777705
Target:  5'- gCCGCguuuuugugguuGAGCUCcagcgGGacgggaaacgUCGACGGGGGcCg -3'
miRNA:   3'- -GGCG------------CUCGAGca---CC----------AGCUGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 1281 0.66 0.741443
Target:  5'- gCCGCGGGCggGcGGUcCGA-GGGcGGUCc -3'
miRNA:   3'- -GGCGCUCGagCaCCA-GCUgCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 121914 0.66 0.741443
Target:  5'- gCGCGGGCcUGaGGUCGGgccugagcgcCGGGGGg- -3'
miRNA:   3'- gGCGCUCGaGCaCCAGCU----------GCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 72089 0.66 0.741443
Target:  5'- gCCGCccccGAGCUCGUu-UgGGCGGGGGc- -3'
miRNA:   3'- -GGCG----CUCGAGCAccAgCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 4610 0.66 0.741443
Target:  5'- cCCG-GGGCUCG-GGUgGcccuuagggGCGGGGGg- -3'
miRNA:   3'- -GGCgCUCGAGCaCCAgC---------UGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 117656 0.66 0.732142
Target:  5'- nCGCGGGC-CGgccgGG-CGcCGGGGGg- -3'
miRNA:   3'- gGCGCUCGaGCa---CCaGCuGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 7803 0.66 0.74514
Target:  5'- gCCGCGGGagaagccuaccuguCUCGgcgGGcgucUCGgcggcucucucgggGCGGGGGUCg -3'
miRNA:   3'- -GGCGCUC--------------GAGCa--CC----AGC--------------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 148899 0.66 0.732142
Target:  5'- cCCgGCGGGCgagCGUccGG-CGACGGGcGUCc -3'
miRNA:   3'- -GG-CGCUCGa--GCA--CCaGCUGCCCcCAG- -5'
21503 3' -60.7 NC_004812.1 + 60938 0.66 0.741443
Target:  5'- gCGUGAGCUUGaGGgaGACGGcGGUCc -3'
miRNA:   3'- gGCGCUCGAGCaCCagCUGCCcCCAG- -5'
21503 3' -60.7 NC_004812.1 + 125534 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 122856 0.66 0.750658
Target:  5'- aCgGCGucCUCG-GcGUCGcgccgcguGCGGGGGUCg -3'
miRNA:   3'- -GgCGCucGAGCaC-CAGC--------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 105056 0.66 0.759779
Target:  5'- gCGCGugcGCUCGccgGGaCGGCcuGGGGUCu -3'
miRNA:   3'- gGCGCu--CGAGCa--CCaGCUGc-CCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 53286 0.66 0.766103
Target:  5'- gCCGCgcgaacucgaccGAGgaCGUGGUCuuGAUgcgcuccacgucggGGGGGUCg -3'
miRNA:   3'- -GGCG------------CUCgaGCACCAG--CUG--------------CCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.