miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 59309 1.11 0.001035
Target:  5'- gCCGCGAGCUCGUGGUCGACGGGGGUCg -3'
miRNA:   3'- -GGCGCUCGAGCACCAGCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 56963 0.81 0.123327
Target:  5'- gCCGCGAGCUUGccgcGGcCGAucCGGGGGUCg -3'
miRNA:   3'- -GGCGCUCGAGCa---CCaGCU--GCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 19873 0.77 0.200292
Target:  5'- uCC-CGGGCgUCGUGGgcgCGGgGGGGGUCg -3'
miRNA:   3'- -GGcGCUCG-AGCACCa--GCUgCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 145744 0.76 0.235871
Target:  5'- cCCGCGggucggggGGCUCGUcGGUCGucgcGCGGGGGg- -3'
miRNA:   3'- -GGCGC--------UCGAGCA-CCAGC----UGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 35016 0.76 0.252677
Target:  5'- uCgGCGAGCUCGgcgGGggccCGGGGGUCg -3'
miRNA:   3'- -GgCGCUCGAGCa--CCagcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 55287 0.76 0.258494
Target:  5'- gCUGUGGGUcgCGUGGUCGAagaGGGGGcCg -3'
miRNA:   3'- -GGCGCUCGa-GCACCAGCUg--CCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 110390 0.75 0.270455
Target:  5'- aCCGgGAGUUUGUGGaggcCGuCGGGGGUUa -3'
miRNA:   3'- -GGCgCUCGAGCACCa---GCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 26484 0.74 0.309007
Target:  5'- gCGCGGGCgggggaCGaucGGUCcGCGGGGGUCg -3'
miRNA:   3'- gGCGCUCGa-----GCa--CCAGcUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 21135 0.74 0.315826
Target:  5'- gCCGUGuGUggCGUGccgCGGCGGGGGUCu -3'
miRNA:   3'- -GGCGCuCGa-GCACca-GCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 146943 0.74 0.315826
Target:  5'- cUCGCGGGCUCGUgGGUCcguccgGGCGGGGuGg- -3'
miRNA:   3'- -GGCGCUCGAGCA-CCAG------CUGCCCC-Cag -5'
21503 3' -60.7 NC_004812.1 + 91193 0.74 0.315826
Target:  5'- aCGCGGGCUCG-GG--GGCGGGGGg- -3'
miRNA:   3'- gGCGCUCGAGCaCCagCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 120306 0.74 0.315826
Target:  5'- gUGCGAGUUCGUGG-CGACGccGGUCu -3'
miRNA:   3'- gGCGCUCGAGCACCaGCUGCccCCAG- -5'
21503 3' -60.7 NC_004812.1 + 30196 0.74 0.322757
Target:  5'- gCGCGAGggCGUGGggGAgGGGGGUg -3'
miRNA:   3'- gGCGCUCgaGCACCagCUgCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 38577 0.74 0.322757
Target:  5'- gCCGgGAGCggggGUGGgCGggcGCGGGGGUCg -3'
miRNA:   3'- -GGCgCUCGag--CACCaGC---UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 155704 0.74 0.322757
Target:  5'- gCGCGAGggCGUGGggGAgGGGGGUg -3'
miRNA:   3'- gGCGCUCgaGCACCagCUgCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 7676 0.74 0.322757
Target:  5'- gCCGgGAGCggggGUGGgCGggcGCGGGGGUCg -3'
miRNA:   3'- -GGCgCUCGag--CACCaGC---UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 122310 0.74 0.329802
Target:  5'- aCGgGGGCgaacgCGUGGUgcgCGugGGGGGUg -3'
miRNA:   3'- gGCgCUCGa----GCACCA---GCugCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 97147 0.74 0.332651
Target:  5'- uCCGCG-GUcgCGUGGUUGAUcgccggggucgucguGGGGGUCg -3'
miRNA:   3'- -GGCGCuCGa-GCACCAGCUG---------------CCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 40198 0.74 0.336959
Target:  5'- cCCGCGGGCcgCGgGGgcucugCG-CGGGGGUCc -3'
miRNA:   3'- -GGCGCUCGa-GCaCCa-----GCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 130822 0.73 0.348644
Target:  5'- uCCGCGAGCgcgucguccgcCGgggcgccgcccggGGUCGGCGGGGG-Cg -3'
miRNA:   3'- -GGCGCUCGa----------GCa------------CCAGCUGCCCCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.