miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 25 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 830 0.66 0.750658
Target:  5'- cCUGgGGGUcCGgGGUgGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAgCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 873 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 899 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 925 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 951 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 1281 0.66 0.741443
Target:  5'- gCCGCGGGCggGcGGUcCGA-GGGcGGUCc -3'
miRNA:   3'- -GGCGCUCGagCaCCA-GCUgCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 1318 0.73 0.351611
Target:  5'- uCCGCGGGCgguccgCGggcGGUCcGCGGGcGGUCc -3'
miRNA:   3'- -GGCGCUCGa-----GCa--CCAGcUGCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 2031 0.71 0.457337
Target:  5'- gCCgGCGGGcCUCGgucGG-CGGCGGGGGg- -3'
miRNA:   3'- -GG-CGCUC-GAGCa--CCaGCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 2248 0.72 0.431409
Target:  5'- cUCGgGGGuCUCGggGGUCu-CGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGCa-CCAGcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 2275 0.72 0.431409
Target:  5'- cUCGgGGGuCUCGggGGUCu-CGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGCa-CCAGcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 2322 0.67 0.684616
Target:  5'- aCGgGGGCaUCGggGGUCuccgcggagGACGGGGGg- -3'
miRNA:   3'- gGCgCUCG-AGCa-CCAG---------CUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 3452 0.7 0.511545
Target:  5'- gCCGCgGGGgUCG-GGccCGGCGGGcGGUCg -3'
miRNA:   3'- -GGCG-CUCgAGCaCCa-GCUGCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 4610 0.66 0.741443
Target:  5'- cCCG-GGGCUCG-GGUgGcccuuagggGCGGGGGg- -3'
miRNA:   3'- -GGCgCUCGAGCaCCAgC---------UGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 5314 0.73 0.348644
Target:  5'- uCCGCGAGCgcgucguccgcCGgggcgccgcccggGGUCGGCGGGGG-Cg -3'
miRNA:   3'- -GGCGCUCGa----------GCa------------CCAGCUGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 5690 0.66 0.767002
Target:  5'- gCCGgGGGuCUCccagggccacgGGggGGCGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGca---------CCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 5844 0.66 0.768797
Target:  5'- gCgGCGcGCUCG-GGa-GGCGGGGGg- -3'
miRNA:   3'- -GgCGCuCGAGCaCCagCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 6161 0.69 0.577853
Target:  5'- gUCGgGGGC-C-UGGgCGGCGGGGGUUg -3'
miRNA:   3'- -GGCgCUCGaGcACCaGCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 7676 0.74 0.322757
Target:  5'- gCCGgGAGCggggGUGGgCGggcGCGGGGGUCg -3'
miRNA:   3'- -GGCgCUCGag--CACCaGC---UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 7803 0.66 0.74514
Target:  5'- gCCGCGGGagaagccuaccuguCUCGgcgGGcgucUCGgcggcucucucgggGCGGGGGUCg -3'
miRNA:   3'- -GGCGCUC--------------GAGCa--CC----AGC--------------UGCCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.