miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 72220 0.72 0.431409
Target:  5'- uCCGCGGcCUCGcGGacugCGGCGGGGcGUCc -3'
miRNA:   3'- -GGCGCUcGAGCaCCa---GCUGCCCC-CAG- -5'
21503 3' -60.7 NC_004812.1 + 899 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 925 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 951 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 147377 0.72 0.405542
Target:  5'- uCCGCGAGCUCucccgGGaggcuUCGACGaucacgcggaacaGGGGUCg -3'
miRNA:   3'- -GGCGCUCGAGca---CC-----AGCUGC-------------CCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 115209 0.72 0.414609
Target:  5'- gCCGCGAgggcgaggggcGUUCGUGG-CGuuGGGGGUg -3'
miRNA:   3'- -GGCGCU-----------CGAGCACCaGCugCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 26290 0.72 0.422959
Target:  5'- cCCGCGgcgacaggggaAGgUCGggGGUCGGCGGGGuUCg -3'
miRNA:   3'- -GGCGC-----------UCgAGCa-CCAGCUGCCCCcAG- -5'
21503 3' -60.7 NC_004812.1 + 2248 0.72 0.431409
Target:  5'- cUCGgGGGuCUCGggGGUCu-CGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGCa-CCAGcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 2275 0.72 0.431409
Target:  5'- cUCGgGGGuCUCGggGGUCu-CGGGGGUCu -3'
miRNA:   3'- -GGCgCUC-GAGCa-CCAGcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 873 0.72 0.398217
Target:  5'- cCUGgGGGUcCGgGGUCGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAGCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 155997 0.73 0.374423
Target:  5'- cCCGCGuGCUCGcGG-CG-CGGGGGa- -3'
miRNA:   3'- -GGCGCuCGAGCaCCaGCuGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 1318 0.73 0.351611
Target:  5'- uCCGCGGGCgguccgCGggcGGUCcGCGGGcGGUCc -3'
miRNA:   3'- -GGCGCUCGa-----GCa--CCAGcUGCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 35016 0.76 0.252677
Target:  5'- uCgGCGAGCUCGgcgGGggccCGGGGGUCg -3'
miRNA:   3'- -GgCGCUCGAGCa--CCagcuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 55287 0.76 0.258494
Target:  5'- gCUGUGGGUcgCGUGGUCGAagaGGGGGcCg -3'
miRNA:   3'- -GGCGCUCGa-GCACCAGCUg--CCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 110390 0.75 0.270455
Target:  5'- aCCGgGAGUUUGUGGaggcCGuCGGGGGUUa -3'
miRNA:   3'- -GGCgCUCGAGCACCa---GCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 26484 0.74 0.309007
Target:  5'- gCGCGGGCgggggaCGaucGGUCcGCGGGGGUCg -3'
miRNA:   3'- gGCGCUCGa-----GCa--CCAGcUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 7676 0.74 0.322757
Target:  5'- gCCGgGAGCggggGUGGgCGggcGCGGGGGUCg -3'
miRNA:   3'- -GGCgCUCGag--CACCaGC---UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 155704 0.74 0.322757
Target:  5'- gCGCGAGggCGUGGggGAgGGGGGUg -3'
miRNA:   3'- gGCGCUCgaGCACCagCUgCCCCCAg -5'
21503 3' -60.7 NC_004812.1 + 97147 0.74 0.332651
Target:  5'- uCCGCG-GUcgCGUGGUUGAUcgccggggucgucguGGGGGUCg -3'
miRNA:   3'- -GGCGCuCGa-GCACCAGCUG---------------CCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 130822 0.73 0.348644
Target:  5'- uCCGCGAGCgcgucguccgcCGgggcgccgcccggGGUCGGCGGGGG-Cg -3'
miRNA:   3'- -GGCGCUCGa----------GCa------------CCAGCUGCCCCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.