miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 82199 0.66 0.738297
Target:  5'- ------aCCGUCUcccggagcgggcugGCCCGGCCCgCGCc -3'
miRNA:   3'- aauuugaGGCAGG--------------UGGGCCGGG-GCGu -5'
21503 5' -59.3 NC_004812.1 + 19101 0.66 0.741177
Target:  5'- -cGGGCUCCGgCCGCgggCCaGGcCCCCGCc -3'
miRNA:   3'- aaUUUGAGGCaGGUG---GG-CC-GGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 30309 0.66 0.750716
Target:  5'- -gGGAcCUCCGcgggCACCaggaaCGGCCCCGCGa -3'
miRNA:   3'- aaUUU-GAGGCag--GUGG-----GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 77264 0.66 0.741177
Target:  5'- -cGAGCUCgG-CCagGCCCGaGCUCCGCc -3'
miRNA:   3'- aaUUUGAGgCaGG--UGGGC-CGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 94777 0.66 0.741177
Target:  5'- ---cGCcCgCGUCCACCCggagugGGCCCaCGCGg -3'
miRNA:   3'- aauuUGaG-GCAGGUGGG------CCGGG-GCGU- -5'
21503 5' -59.3 NC_004812.1 + 65076 0.66 0.741177
Target:  5'- --cGGCcgCCG-CCGCCCuGGCCgCGCGc -3'
miRNA:   3'- aauUUGa-GGCaGGUGGG-CCGGgGCGU- -5'
21503 5' -59.3 NC_004812.1 + 130826 0.66 0.731547
Target:  5'- -cGAGCgcgUCGUCCGCCgGGgCgCCGCc -3'
miRNA:   3'- aaUUUGa--GGCAGGUGGgCCgG-GGCGu -5'
21503 5' -59.3 NC_004812.1 + 79628 0.66 0.750716
Target:  5'- -aGGGCggCCGUggCCGgcggcCCCGGCCCgGCGg -3'
miRNA:   3'- aaUUUGa-GGCA--GGU-----GGGCCGGGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 4561 0.66 0.741177
Target:  5'- cUGGACUCgCG-CCAcccuuggaccCCCGGgCCCGCc -3'
miRNA:   3'- aAUUUGAG-GCaGGU----------GGGCCgGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 144230 0.66 0.731547
Target:  5'- ----uCUUCGcCCuCCCGGCCgCGCGg -3'
miRNA:   3'- aauuuGAGGCaGGuGGGCCGGgGCGU- -5'
21503 5' -59.3 NC_004812.1 + 29087 0.66 0.750716
Target:  5'- -cGAGCcUCG-CCgaggACgCCGGCCCCGCGa -3'
miRNA:   3'- aaUUUGaGGCaGG----UG-GGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 150947 0.66 0.741177
Target:  5'- -aGGACUCCGacgCCcCCCGGCggaCGCGg -3'
miRNA:   3'- aaUUUGAGGCa--GGuGGGCCGgg-GCGU- -5'
21503 5' -59.3 NC_004812.1 + 43353 0.66 0.750716
Target:  5'- --uGACgaaaaCGUCCACCCc-CCCCGCGa -3'
miRNA:   3'- aauUUGag---GCAGGUGGGccGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1519 0.66 0.741177
Target:  5'- ---cACggggCCGUCC-CCgGGCgCCCGCc -3'
miRNA:   3'- aauuUGa---GGCAGGuGGgCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 21533 0.66 0.750716
Target:  5'- -cGGGCUCCGagCgCGCCCccGCCCCGUc -3'
miRNA:   3'- aaUUUGAGGCa-G-GUGGGc-CGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 104295 0.66 0.750716
Target:  5'- uUUAAGugCCGcCCACCCcgacgccggccgGGCCCCGUg -3'
miRNA:   3'- -AAUUUgaGGCaGGUGGG------------CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 127007 0.66 0.750716
Target:  5'- -gGAGCgCCGgCCgGCCCGcGCCgCCGCGc -3'
miRNA:   3'- aaUUUGaGGCaGG-UGGGC-CGG-GGCGU- -5'
21503 5' -59.3 NC_004812.1 + 58622 0.66 0.778689
Target:  5'- -cGAGCccCCGUgCCuCCCGGCCCacCGCc -3'
miRNA:   3'- aaUUUGa-GGCA-GGuGGGCCGGG--GCGu -5'
21503 5' -59.3 NC_004812.1 + 36917 0.66 0.741177
Target:  5'- -gGGACggugCCG-CCAgcuCCCGcaGCCCCGCGg -3'
miRNA:   3'- aaUUUGa---GGCaGGU---GGGC--CGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 3152 0.66 0.750716
Target:  5'- ---cGCUCCccUCCGCCCccCCCCGCGc -3'
miRNA:   3'- aauuUGAGGc-AGGUGGGccGGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.