miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 59359 1.06 0.002156
Target:  5'- gUUAAACUCCGUCCACCCGGCCCCGCAg -3'
miRNA:   3'- -AAUUUGAGGCAGGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1712 0.88 0.037624
Target:  5'- --cGACUCCGccagacUCCGCCCGGCCCCGCGc -3'
miRNA:   3'- aauUUGAGGC------AGGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 127220 0.88 0.037624
Target:  5'- --cGACUCCGccagacUCCGCCCGGCCCCGCGc -3'
miRNA:   3'- aauUUGAGGC------AGGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 10770 0.8 0.126518
Target:  5'- -gAGACUCCGUCCccggGCCCGGCCUuCGCu -3'
miRNA:   3'- aaUUUGAGGCAGG----UGGGCCGGG-GCGu -5'
21503 5' -59.3 NC_004812.1 + 84463 0.78 0.180056
Target:  5'- -cAAGC-CCGccUCC-CCCGGCCCCGCAc -3'
miRNA:   3'- aaUUUGaGGC--AGGuGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 50160 0.77 0.198697
Target:  5'- --cGGCUCCGUCCGCCgGGCCCUc-- -3'
miRNA:   3'- aauUUGAGGCAGGUGGgCCGGGGcgu -5'
21503 5' -59.3 NC_004812.1 + 100265 0.75 0.264909
Target:  5'- -gGAugUCCG-CCACCCGGgCCCGgGg -3'
miRNA:   3'- aaUUugAGGCaGGUGGGCCgGGGCgU- -5'
21503 5' -59.3 NC_004812.1 + 33515 0.75 0.28404
Target:  5'- -cGGACUC--UCCGCgCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGAGgcAGGUG-GGCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 37120 0.75 0.28404
Target:  5'- -cGGACgCCGccccugCCGCCgCGGCCCCGCGg -3'
miRNA:   3'- aaUUUGaGGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 2614 0.75 0.28404
Target:  5'- -cGGACUC--UCCGCgCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGAGgcAGGUG-GGCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 6219 0.75 0.28404
Target:  5'- -cGGACgCCGccccugCCGCCgCGGCCCCGCGg -3'
miRNA:   3'- aaUUUGaGGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 99185 0.75 0.29739
Target:  5'- aUGGACcCCGUggugCCGCCCGGCCCC-CGg -3'
miRNA:   3'- aAUUUGaGGCA----GGUGGGCCGGGGcGU- -5'
21503 5' -59.3 NC_004812.1 + 3219 0.74 0.304246
Target:  5'- ----cCUCCGcagaccccaccuUCCACCCGGCgCCCGCc -3'
miRNA:   3'- aauuuGAGGC------------AGGUGGGCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 74832 0.74 0.304246
Target:  5'- ---cACcUCGUcCCACUCGGCCCCGCGg -3'
miRNA:   3'- aauuUGaGGCA-GGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 34120 0.74 0.304246
Target:  5'- ----cCUCCGcagaccccaccuUCCACCCGGCgCCCGCc -3'
miRNA:   3'- aauuuGAGGC------------AGGUGGGCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 5253 0.74 0.311223
Target:  5'- -gGGGCgcgCCGagucggCCGCCgCGGCCCCGCGc -3'
miRNA:   3'- aaUUUGa--GGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 130761 0.74 0.311223
Target:  5'- -gGGGCgcgCCGagucggCCGCCgCGGCCCCGCGc -3'
miRNA:   3'- aaUUUGa--GGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 80426 0.74 0.317605
Target:  5'- -gGGAC-CCGUCCccgagcgGCCgGGCCCUGCAg -3'
miRNA:   3'- aaUUUGaGGCAGG-------UGGgCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 8607 0.74 0.332878
Target:  5'- -cAuuCUCCGUCgCcCUCGGCCCCGCc -3'
miRNA:   3'- aaUuuGAGGCAG-GuGGGCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 65469 0.73 0.355618
Target:  5'- -cGGACcgcCCGUCCccgaCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGa--GGCAGGug--GGCCGGGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.