miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 12927 0.7 0.513089
Target:  5'- -gAAACUCCGcgUCCgucGCCCGaGCCCCcaGCGu -3'
miRNA:   3'- aaUUUGAGGC--AGG---UGGGC-CGGGG--CGU- -5'
21503 5' -59.3 NC_004812.1 + 151210 0.72 0.438983
Target:  5'- ---cGCggggCCGgcgacgCC-CCCGGCCCCGCGc -3'
miRNA:   3'- aauuUGa---GGCa-----GGuGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 118778 0.71 0.447919
Target:  5'- ---cGCUUCccccCCAcCCCGGCCCCGCGg -3'
miRNA:   3'- aauuUGAGGca--GGU-GGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 62258 0.71 0.447919
Target:  5'- ---cGCUCCaacgCCGCCC-GCCCCGCGc -3'
miRNA:   3'- aauuUGAGGca--GGUGGGcCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 38574 0.71 0.447919
Target:  5'- -gGGAagaUCCGcgggUCCGCCUGGCCCgGCGc -3'
miRNA:   3'- aaUUUg--AGGC----AGGUGGGCCGGGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 706 0.71 0.456956
Target:  5'- -gGAGCUCCGUCgGCgUCGGCgCCgGCGc -3'
miRNA:   3'- aaUUUGAGGCAGgUG-GGCCG-GGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 125592 0.71 0.456956
Target:  5'- -cGGGCUcCCGggcgggCU-CCCGGCCCCGCGc -3'
miRNA:   3'- aaUUUGA-GGCa-----GGuGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 120854 0.71 0.484634
Target:  5'- ---cGCgggCCGcggCCccucCCCGGCCCCGCAg -3'
miRNA:   3'- aauuUGa--GGCa--GGu---GGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 117016 0.7 0.503525
Target:  5'- cUGAguGCUCUuccCCGCCCGGCCUgGCAc -3'
miRNA:   3'- aAUU--UGAGGca-GGUGGGCCGGGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 48361 0.72 0.428394
Target:  5'- -aGGGCUCCGccgcggacgccgCCGCCgGGCCCgGCGa -3'
miRNA:   3'- aaUUUGAGGCa-----------GGUGGgCCGGGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 26029 0.72 0.412799
Target:  5'- -gGGGCUCCacGUCCAggggccCCCGgacGCCCCGCAg -3'
miRNA:   3'- aaUUUGAGG--CAGGU------GGGC---CGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 67276 0.72 0.395888
Target:  5'- -cGAGCUCCGcgucgggCCGggcCCCGGCgCCGCAg -3'
miRNA:   3'- aaUUUGAGGCa------GGU---GGGCCGgGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 100265 0.75 0.264909
Target:  5'- -gGAugUCCG-CCACCCGGgCCCGgGg -3'
miRNA:   3'- aaUUugAGGCaGGUGGGCCgGGGCgU- -5'
21503 5' -59.3 NC_004812.1 + 2614 0.75 0.28404
Target:  5'- -cGGACUC--UCCGCgCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGAGgcAGGUG-GGCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 6219 0.75 0.28404
Target:  5'- -cGGACgCCGccccugCCGCCgCGGCCCCGCGg -3'
miRNA:   3'- aaUUUGaGGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 99185 0.75 0.29739
Target:  5'- aUGGACcCCGUggugCCGCCCGGCCCC-CGg -3'
miRNA:   3'- aAUUUGaGGCA----GGUGGGCCGGGGcGU- -5'
21503 5' -59.3 NC_004812.1 + 74832 0.74 0.304246
Target:  5'- ---cACcUCGUcCCACUCGGCCCCGCGg -3'
miRNA:   3'- aauuUGaGGCA-GGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 3219 0.74 0.304246
Target:  5'- ----cCUCCGcagaccccaccuUCCACCCGGCgCCCGCc -3'
miRNA:   3'- aauuuGAGGC------------AGGUGGGCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 130761 0.74 0.311223
Target:  5'- -gGGGCgcgCCGagucggCCGCCgCGGCCCCGCGc -3'
miRNA:   3'- aaUUUGa--GGCa-----GGUGG-GCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 65469 0.73 0.355618
Target:  5'- -cGGACcgcCCGUCCccgaCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGa--GGCAGGug--GGCCGGGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.