miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 83 0.71 0.456956
Target:  5'- -cGGGCUcCCGggcgggCU-CCCGGCCCCGCGc -3'
miRNA:   3'- aaUUUGA-GGCa-----GGuGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 227 0.67 0.692276
Target:  5'- --cAGCcCCGgCCcCCgCGGCCCCGCu -3'
miRNA:   3'- aauUUGaGGCaGGuGG-GCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 287 0.68 0.652225
Target:  5'- ---cGCUCCGccgCCGUCCGGCCgCGCc -3'
miRNA:   3'- aauuUGAGGCa--GGUGGGCCGGgGCGu -5'
21503 5' -59.3 NC_004812.1 + 502 0.67 0.702188
Target:  5'- -cGAACUCaCGgCCGCCgCGGCcggggcgggCCCGCGc -3'
miRNA:   3'- aaUUUGAG-GCaGGUGG-GCCG---------GGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 574 0.66 0.72961
Target:  5'- ---cGC-CCGUCCcgcggcgcggccCCCGGCCCCGg- -3'
miRNA:   3'- aauuUGaGGCAGGu-----------GGGCCGGGGCgu -5'
21503 5' -59.3 NC_004812.1 + 706 0.71 0.456956
Target:  5'- -gGAGCUCCGUCgGCgUCGGCgCCgGCGc -3'
miRNA:   3'- aaUUUGAGGCAGgUG-GGCCG-GGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 830 0.69 0.581822
Target:  5'- -cGGugUCCGa-CGCCCggagGGCCCCGCGc -3'
miRNA:   3'- aaUUugAGGCagGUGGG----CCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1232 0.67 0.712043
Target:  5'- -gGGGCUCCuccCCGCCCgggcGGCgCCGCGg -3'
miRNA:   3'- aaUUUGAGGca-GGUGGG----CCGgGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1307 0.68 0.632073
Target:  5'- -gGGGCgCCGaCC-CCCgGGCCCCGCc -3'
miRNA:   3'- aaUUUGaGGCaGGuGGG-CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 1400 0.69 0.591829
Target:  5'- ---cGCUCUucgCgGCCCGGCCCCGaCGg -3'
miRNA:   3'- aauuUGAGGca-GgUGGGCCGGGGC-GU- -5'
21503 5' -59.3 NC_004812.1 + 1499 0.66 0.750716
Target:  5'- -gGAGCgCCGgCCgGCCCGcGCCgCCGCGc -3'
miRNA:   3'- aaUUUGaGGCaGG-UGGGC-CGG-GGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1519 0.66 0.741177
Target:  5'- ---cACggggCCGUCC-CCgGGCgCCCGCc -3'
miRNA:   3'- aauuUGa---GGCAGGuGGgCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 1712 0.88 0.037624
Target:  5'- --cGACUCCGccagacUCCGCCCGGCCCCGCGc -3'
miRNA:   3'- aauUUGAGGC------AGGUGGGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1880 0.68 0.621994
Target:  5'- --uGGC-CCGggCGCCCgGGCCCCGCc -3'
miRNA:   3'- aauUUGaGGCagGUGGG-CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 2116 0.67 0.692276
Target:  5'- ---cGCUCCcaGUCCcaguCCCaguccggggaGGCCCCGCGg -3'
miRNA:   3'- aauuUGAGG--CAGGu---GGG----------CCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 2614 0.75 0.28404
Target:  5'- -cGGACUC--UCCGCgCCGGCCCCGCc -3'
miRNA:   3'- aaUUUGAGgcAGGUG-GGCCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 3152 0.66 0.750716
Target:  5'- ---cGCUCCccUCCGCCCccCCCCGCGc -3'
miRNA:   3'- aauuUGAGGc-AGGUGGGccGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 3219 0.74 0.304246
Target:  5'- ----cCUCCGcagaccccaccuUCCACCCGGCgCCCGCc -3'
miRNA:   3'- aauuuGAGGC------------AGGUGGGCCG-GGGCGu -5'
21503 5' -59.3 NC_004812.1 + 3458 0.68 0.652225
Target:  5'- ------cCCGUggccccCCGCCCGcGCCCCGCc -3'
miRNA:   3'- aauuugaGGCA------GGUGGGC-CGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 3824 0.66 0.760153
Target:  5'- ----cCUgCGgccCCGCCCcaGGCCCCGCc -3'
miRNA:   3'- aauuuGAgGCa--GGUGGG--CCGGGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.