miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 76227 0.66 0.982108
Target:  5'- gCGGAAGGGGGGg----CggGCGgcGGa -3'
miRNA:   3'- -GCCUUCCCCCUucaaaGagCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 13566 0.66 0.982108
Target:  5'- -cGAGGGGGGGcgccggagcgAGUUUCcC-CGggGGg -3'
miRNA:   3'- gcCUUCCCCCU----------UCAAAGaGcGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 106796 0.66 0.982108
Target:  5'- gCGGGAGGGGGc-----CUCGCGccgacuGGGc -3'
miRNA:   3'- -GCCUUCCCCCuucaaaGAGCGCu-----UCC- -5'
21513 3' -52.4 NC_004812.1 + 146888 0.66 0.988907
Target:  5'- gCGGucuGGGGuguGGggGUUgccCUCGUuuuGAGGGg -3'
miRNA:   3'- -GCCu--UCCC---CCuuCAAa--GAGCG---CUUCC- -5'
21513 3' -52.4 NC_004812.1 + 7273 0.66 0.987435
Target:  5'- gGGGAGGGGGcGGcggC-CGCGuguGAGGc -3'
miRNA:   3'- gCCUUCCCCCuUCaaaGaGCGC---UUCC- -5'
21513 3' -52.4 NC_004812.1 + 8870 0.66 0.985817
Target:  5'- gGGgcGGGGGAaaGGgaggagGCGGAGGa -3'
miRNA:   3'- gCCuuCCCCCU--UCaaagagCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 29778 0.66 0.990242
Target:  5'- gGGGAGGGGcGGGg----CGCGgcGGg -3'
miRNA:   3'- gCCUUCCCCcUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 155286 0.66 0.990242
Target:  5'- gGGGAGGGGcGGGg----CGCGgcGGg -3'
miRNA:   3'- gCCUUCCCCcUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 84352 0.66 0.988041
Target:  5'- gCGGAAGcGGGGugcGGUggcgggccggcccuuUuaacUCUCGCGggGa -3'
miRNA:   3'- -GCCUUC-CCCCu--UCA---------------A----AGAGCGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 5944 0.66 0.988907
Target:  5'- cCGGGcacAGGGGGcagggcccgggGAGg--C-CGCGggGGg -3'
miRNA:   3'- -GCCU---UCCCCC-----------UUCaaaGaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 156313 0.66 0.984044
Target:  5'- aGGGAGGGcGGggGa----CGgGAGGGg -3'
miRNA:   3'- gCCUUCCC-CCuuCaaagaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 115192 0.66 0.988907
Target:  5'- gCGGggGGgccGGGAAag--C-CGCGAGGGc -3'
miRNA:   3'- -GCCuuCC---CCCUUcaaaGaGCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 145843 0.66 0.982108
Target:  5'- cCGGGcccGGGGAcGgagUCUCGCGcAGGc -3'
miRNA:   3'- -GCCUuc-CCCCUuCaa-AGAGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 150408 0.66 0.987435
Target:  5'- nGGAAGGGGGGAa------GgGAAGGg -3'
miRNA:   3'- gCCUUCCCCCUUcaaagagCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 71995 0.66 0.990242
Target:  5'- cCGGGgcuGGGGcGcGGUcgUCUCGCGGucgcucGGGg -3'
miRNA:   3'- -GCCUu--CCCC-CuUCAa-AGAGCGCU------UCC- -5'
21513 3' -52.4 NC_004812.1 + 118510 0.66 0.988189
Target:  5'- gGGGAGGGGGAGGagggaagaaagggggCGaGAGGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaaga----------GCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 11361 0.66 0.981286
Target:  5'- aCGGGAGGGGGgcGguaccgggGCGggGa -3'
miRNA:   3'- -GCCUUCCCCCuuCaaagag--CGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 57344 0.66 0.990242
Target:  5'- gGGggGGGGGGAGaggaa-GC-AGGGa -3'
miRNA:   3'- gCCuuCCCCCUUCaaagagCGcUUCC- -5'
21513 3' -52.4 NC_004812.1 + 70919 0.66 0.984044
Target:  5'- nGGggGcGGGAGGUgggaUCUgcCGuCGggGGa -3'
miRNA:   3'- gCCuuCcCCCUUCAa---AGA--GC-GCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 1211 0.66 0.985817
Target:  5'- uCGGccGGGGGcGGcg-C-CGCGggGGc -3'
miRNA:   3'- -GCCuuCCCCCuUCaaaGaGCGCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.