miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 50887 1.03 0.018196
Target:  5'- gCGGAAGGGGG-AGUUUCUCGCGAAGGg -3'
miRNA:   3'- -GCCUUCCCCCuUCAAAGAGCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 70894 0.83 0.281677
Target:  5'- gGGGAGGGGGcGGGgaUCUCGCGcGGGg -3'
miRNA:   3'- gCCUUCCCCC-UUCaaAGAGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 24952 0.8 0.43104
Target:  5'- uGGAGGGGacacuccgGGAAGUggCUCGCGAGGa -3'
miRNA:   3'- gCCUUCCC--------CCUUCAaaGAGCGCUUCc -5'
21513 3' -52.4 NC_004812.1 + 40650 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 48156 0.79 0.486956
Target:  5'- aGGAucAGGGGGguGUggaUCGCGAAGGu -3'
miRNA:   3'- gCCU--UCCCCCuuCAaagAGCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 40690 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 40748 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 40610 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 40552 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 40513 0.79 0.486956
Target:  5'- gCGGggGaGGGGAGGgggg-CGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 156367 0.78 0.516174
Target:  5'- gGGggGGGGGGAGgagagCggggcCGCGggGGc -3'
miRNA:   3'- gCCuuCCCCCUUCaaa--Ga----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 30859 0.78 0.516174
Target:  5'- gGGggGGGGGGAGgagagCggggcCGCGggGGc -3'
miRNA:   3'- gCCuuCCCCCUUCaaa--Ga----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 155564 0.78 0.536039
Target:  5'- gGGAGGGGGGAGGgg-CgCGCGcGGGc -3'
miRNA:   3'- gCCUUCCCCCUUCaaaGaGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 30055 0.78 0.536039
Target:  5'- gGGAGGGGGGAGGgg-CgCGCGcGGGc -3'
miRNA:   3'- gCCUUCCCCCUUCaaaGaGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 102273 0.78 0.53704
Target:  5'- aGGAGGGGGGAGGgauggguaggGCGAGGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaagag----CGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 137993 0.77 0.566311
Target:  5'- gGGggGGGGGggGgggggaGCGggGGc -3'
miRNA:   3'- gCCuuCCCCCuuCaaagagCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 54729 0.77 0.576504
Target:  5'- gGGGAGGGGGAGGgggCcggCGCGggGc -3'
miRNA:   3'- gCCUUCCCCCUUCaaaGa--GCGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 71825 0.76 0.607296
Target:  5'- gCGGAAGGGGGAGGg----UGCGgcGGc -3'
miRNA:   3'- -GCCUUCCCCCUUCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 2319 0.76 0.617607
Target:  5'- aGGAcGGGGGcaucGGGggUCUcCGCGGAGGa -3'
miRNA:   3'- gCCUuCCCCC----UUCaaAGA-GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 33220 0.76 0.617607
Target:  5'- aGGAcGGGGGcaucGGGggUCUcCGCGGAGGa -3'
miRNA:   3'- gCCUuCCCCC----UUCaaAGA-GCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.