miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 33 0.71 0.856187
Target:  5'- uCGGggGGcGGggGUUcgUUCGgGggGGc -3'
miRNA:   3'- -GCCuuCCcCCuuCAAa-GAGCgCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 216 0.73 0.778273
Target:  5'- gGGAGGGGGGGcccaAGgcUCcCGCGggGc -3'
miRNA:   3'- gCCUUCCCCCU----UCaaAGaGCGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 259 0.68 0.956071
Target:  5'- gCGGGAGGaGGGggGggUCUCccGCGc--- -3'
miRNA:   3'- -GCCUUCC-CCCuuCaaAGAG--CGCuucc -5'
21513 3' -52.4 NC_004812.1 + 1211 0.66 0.985817
Target:  5'- uCGGccGGGGGcGGcg-C-CGCGggGGc -3'
miRNA:   3'- -GCCuuCCCCCuUCaaaGaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 1433 0.7 0.911742
Target:  5'- gGGGAGGGGccGGgg-C-CGCGAGGGc -3'
miRNA:   3'- gCCUUCCCCcuUCaaaGaGCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 1979 0.69 0.938779
Target:  5'- gGGAGGGGGGGAGggguggcgggUCcCGcCGgcGGu -3'
miRNA:   3'- gCCUUCCCCCUUCaa--------AGaGC-GCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 2319 0.76 0.617607
Target:  5'- aGGAcGGGGGcaucGGGggUCUcCGCGGAGGa -3'
miRNA:   3'- gCCUuCCCCC----UUCaaAGA-GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 3110 0.75 0.658886
Target:  5'- gGGGAGGGGGAGGgaguggUGgGGAGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaaga-GCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 4779 0.7 0.917635
Target:  5'- gCGGu-GGGGGAGGgggCgggGCGAGGGc -3'
miRNA:   3'- -GCCuuCCCCCUUCaaaGag-CGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5102 0.71 0.861616
Target:  5'- gGGAGGcGGGGGAGUcugggguccggggggCgggCGCGGAGGc -3'
miRNA:   3'- gCCUUC-CCCCUUCAaa-------------Ga--GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5278 0.67 0.98
Target:  5'- aCGGAGgcGGGGGGAGg--CcCG-GGAGGa -3'
miRNA:   3'- -GCCUU--CCCCCUUCaaaGaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5389 0.75 0.658886
Target:  5'- gCGGGAGGGGGGucGGggUCUcccagggaCGCGgcGGg -3'
miRNA:   3'- -GCCUUCCCCCU--UCaaAGA--------GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 5623 0.67 0.98
Target:  5'- cCGGAGGcggcucGGGGGccgggcccGGggUCgccgggCGCGAGGGg -3'
miRNA:   3'- -GCCUUC------CCCCU--------UCaaAGa-----GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5710 0.73 0.805758
Target:  5'- aCGGggGGGcGGggGUcugC-CGCgGGAGGa -3'
miRNA:   3'- -GCCuuCCC-CCuuCAaa-GaGCG-CUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5853 0.67 0.979557
Target:  5'- uCGGGAGGcGGGggGaacaugggCGCGGgccGGGg -3'
miRNA:   3'- -GCCUUCC-CCCuuCaaaga---GCGCU---UCC- -5'
21513 3' -52.4 NC_004812.1 + 5944 0.66 0.988907
Target:  5'- cCGGGcacAGGGGGcagggcccgggGAGg--C-CGCGggGGg -3'
miRNA:   3'- -GCCU---UCCCCC-----------UUCaaaGaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 6017 0.68 0.963324
Target:  5'- gGGAAGGGGGAcgcGGgcagCgacugCGCGccguAGGg -3'
miRNA:   3'- gCCUUCCCCCU---UCaaa-Ga----GCGCu---UCC- -5'
21513 3' -52.4 NC_004812.1 + 6077 0.69 0.943458
Target:  5'- gCGGggGGuGGGAAGgagggaGgGGAGGg -3'
miRNA:   3'- -GCCuuCC-CCCUUCaaagagCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 6132 0.7 0.917635
Target:  5'- gGGGAGGGGGAGGg-----GgGggGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaagagCgCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 6171 0.7 0.899235
Target:  5'- uGGgcGGcGGggGUUgggUCGCGGAGGc -3'
miRNA:   3'- gCCuuCCcCCuuCAAag-AGCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.