miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 135894 0.74 0.729927
Target:  5'- aCGGggGcGGGGgcGcggCUCGCaGAGGGa -3'
miRNA:   3'- -GCCuuC-CCCCuuCaaaGAGCG-CUUCC- -5'
21513 3' -52.4 NC_004812.1 + 148536 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 148588 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 148640 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 148717 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 148769 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 116920 0.75 0.66506
Target:  5'- gCGGGAGGGGGAGGaggccggaGUGggGGg -3'
miRNA:   3'- -GCCUUCCCCCUUCaaagag--CGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 70859 0.75 0.689643
Target:  5'- aGGAGacgcGGGGGgcGUggCUgCGCGggGGg -3'
miRNA:   3'- gCCUU----CCCCCuuCAaaGA-GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 7459 0.74 0.729927
Target:  5'- aGGgcGGGGGGAaacucgccGUUUCg-GCGAGGGg -3'
miRNA:   3'- gCCuuCCCCCUU--------CAAAGagCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 148484 0.75 0.663003
Target:  5'- gCGGggGaGGGGAGGgcgaggggugCGCGggGGa -3'
miRNA:   3'- -GCCuuC-CCCCUUCaaaga-----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 84418 0.75 0.658886
Target:  5'- --cGAGGGGGAAGagcUCgCGCGAAGGg -3'
miRNA:   3'- gccUUCCCCCUUCaa-AGaGCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 3110 0.75 0.658886
Target:  5'- gGGGAGGGGGAGGgaguggUGgGGAGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaaga-GCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 24952 0.8 0.43104
Target:  5'- uGGAGGGGacacuccgGGAAGUggCUCGCGAGGa -3'
miRNA:   3'- gCCUUCCC--------CCUUCAaaGAGCGCUUCc -5'
21513 3' -52.4 NC_004812.1 + 156367 0.78 0.516174
Target:  5'- gGGggGGGGGGAGgagagCggggcCGCGggGGc -3'
miRNA:   3'- gCCuuCCCCCUUCaaa--Ga----GCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 155564 0.78 0.536039
Target:  5'- gGGAGGGGGGAGGgg-CgCGCGcGGGc -3'
miRNA:   3'- gCCUUCCCCCUUCaaaGaGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 102273 0.78 0.53704
Target:  5'- aGGAGGGGGGAGGgauggguaggGCGAGGGg -3'
miRNA:   3'- gCCUUCCCCCUUCaaagag----CGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 137993 0.77 0.566311
Target:  5'- gGGggGGGGGggGgggggaGCGggGGc -3'
miRNA:   3'- gCCuuCCCCCuuCaaagagCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 54729 0.77 0.576504
Target:  5'- gGGGAGGGGGAGGgggCcggCGCGggGc -3'
miRNA:   3'- gCCUUCCCCCUUCaaaGa--GCGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 2319 0.76 0.617607
Target:  5'- aGGAcGGGGGcaucGGGggUCUcCGCGGAGGa -3'
miRNA:   3'- gCCUuCCCCC----UUCaaAGA-GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5389 0.75 0.658886
Target:  5'- gCGGGAGGGGGGucGGggUCUcccagggaCGCGgcGGg -3'
miRNA:   3'- -GCCUUCCCCCU--UCaaAGA--------GCGCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.