miRNA display CGI


Results 1 - 20 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 64343 0.66 0.888306
Target:  5'- gGACGCCgugGCGG--GCCUGGAGCcggaCCGg -3'
miRNA:   3'- -UUGCGGg--CGCUuuUGGGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 154476 0.66 0.881419
Target:  5'- -cCGCCCGCGggGccucCCCGGAcugGgaCUGg -3'
miRNA:   3'- uuGCGGGCGCuuUu---GGGCCU---UgaGGC- -5'
21513 5' -56.3 NC_004812.1 + 95526 0.66 0.894969
Target:  5'- cGAC-CCCgGCGggGcgGCCCGGGGCgucgcgccCCGg -3'
miRNA:   3'- -UUGcGGG-CGCuuU--UGGGCCUUGa-------GGC- -5'
21513 5' -56.3 NC_004812.1 + 6257 0.66 0.886263
Target:  5'- cGCGCCCGCGGucgggggggagcuaGGGCCaGGGGCacggCCa -3'
miRNA:   3'- uUGCGGGCGCU--------------UUUGGgCCUUGa---GGc -5'
21513 5' -56.3 NC_004812.1 + 89270 0.66 0.913583
Target:  5'- gGACGCgcaggCCGCGGcgcGGCgCGGAGCcCCGg -3'
miRNA:   3'- -UUGCG-----GGCGCUu--UUGgGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 127644 0.66 0.887627
Target:  5'- --aGUCCGgGGAGGCCCcgcgggcGGGGCUCgCGg -3'
miRNA:   3'- uugCGGGCgCUUUUGGG-------CCUUGAG-GC- -5'
21513 5' -56.3 NC_004812.1 + 72535 0.66 0.880719
Target:  5'- cGGCGCCCGCGGcgaacggGAACCgCgccucgggGGGGCgCCGg -3'
miRNA:   3'- -UUGCGGGCGCU-------UUUGG-G--------CCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 156538 0.66 0.888306
Target:  5'- --nGCCCGgGAGcccGCCCGgGAGC-CCGc -3'
miRNA:   3'- uugCGGGCgCUUu--UGGGC-CUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 97338 0.66 0.888306
Target:  5'- cGCGCCCGCGAcccuGAuCCCGcGcACcgCCGc -3'
miRNA:   3'- uUGCGGGCGCU----UUuGGGC-CuUGa-GGC- -5'
21513 5' -56.3 NC_004812.1 + 8155 0.66 0.888306
Target:  5'- --gGCCCGCGcgcucACCUGGGGCcccccaugggUCCGg -3'
miRNA:   3'- uugCGGGCGCuuu--UGGGCCUUG----------AGGC- -5'
21513 5' -56.3 NC_004812.1 + 128 0.66 0.888306
Target:  5'- --nGCCCGgGAGcccGCCCGgGAGC-CCGc -3'
miRNA:   3'- uugCGGGCgCUUu--UGGGC-CUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 95778 0.66 0.901405
Target:  5'- --aGCCCGUG-GAGCCgGGGGCggugCUGg -3'
miRNA:   3'- uugCGGGCGCuUUUGGgCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 80592 0.66 0.888306
Target:  5'- gGGC-CCCGCGggG-CCCGGcugggGGCUCgGu -3'
miRNA:   3'- -UUGcGGGCGCuuUuGGGCC-----UUGAGgC- -5'
21513 5' -56.3 NC_004812.1 + 93611 0.66 0.881419
Target:  5'- cGGCgGCCCGCGcuuccGCCCGGAagaAgUCCc -3'
miRNA:   3'- -UUG-CGGGCGCuuu--UGGGCCU---UgAGGc -5'
21513 5' -56.3 NC_004812.1 + 3256 0.66 0.888306
Target:  5'- gGGCGCCCGCGcc--CCCGccGC-CCGa -3'
miRNA:   3'- -UUGCGGGCGCuuuuGGGCcuUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 147370 0.66 0.888306
Target:  5'- -uCGCCCuuccGCGAGcucuCCCGGGagGCUUCGa -3'
miRNA:   3'- uuGCGGG----CGCUUuu--GGGCCU--UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 73551 0.66 0.894969
Target:  5'- cAGCGaCCGCGGGcAGCaCgCGGAcCUCCGg -3'
miRNA:   3'- -UUGCgGGCGCUU-UUG-G-GCCUuGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 77257 0.66 0.888306
Target:  5'- aAGCGCUCGagcuCGGccAGGCCCG-AGCUCCGc -3'
miRNA:   3'- -UUGCGGGC----GCU--UUUGGGCcUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 16198 0.66 0.888306
Target:  5'- cAGCaGCgCGCGGcGGACCCGGGccGCgcgCCGg -3'
miRNA:   3'- -UUG-CGgGCGCU-UUUGGGCCU--UGa--GGC- -5'
21513 5' -56.3 NC_004812.1 + 83512 0.66 0.888306
Target:  5'- aGGCgGUgCGCGAgcAGGCCCGGuaaguuCUCCGc -3'
miRNA:   3'- -UUG-CGgGCGCU--UUUGGGCCuu----GAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.