miRNA display CGI


Results 1 - 20 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 82521 0.73 0.515483
Target:  5'- cGGgGCCCGCGAGGcCCCGGGagGCgCCGc -3'
miRNA:   3'- -UUgCGGGCGCUUUuGGGCCU--UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 35654 0.74 0.48669
Target:  5'- gGGCGCgCGCGGGggUCgGGGGCUCUGu -3'
miRNA:   3'- -UUGCGgGCGCUUuuGGgCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 105018 0.74 0.48669
Target:  5'- cGCGcCCCGCGGugccgacuGACCCGGcgcCUCCGg -3'
miRNA:   3'- uUGC-GGGCGCUu-------UUGGGCCuu-GAGGC- -5'
21513 5' -56.3 NC_004812.1 + 38173 0.74 0.496206
Target:  5'- cGGgGCCCGCGGgagGGACCCGcGGGC-CCGg -3'
miRNA:   3'- -UUgCGGGCGCU---UUUGGGC-CUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 54390 0.74 0.496206
Target:  5'- gGGCGCCCGCGGGcACggCCGGGGCUgCu -3'
miRNA:   3'- -UUGCGGGCGCUUuUG--GGCCUUGAgGc -5'
21513 5' -56.3 NC_004812.1 + 39841 0.74 0.505805
Target:  5'- -gUGCCCGUaggcggugcgGggGGCCgGGGGCUCCGc -3'
miRNA:   3'- uuGCGGGCG----------CuuUUGGgCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 144606 0.74 0.505805
Target:  5'- gGugGCuCCGCGGAGA-CCGGAGCccgCCGg -3'
miRNA:   3'- -UugCG-GGCGCUUUUgGGCCUUGa--GGC- -5'
21513 5' -56.3 NC_004812.1 + 74448 0.74 0.505805
Target:  5'- gAGgGCCCGCGcgc-CCCGGAACUCg- -3'
miRNA:   3'- -UUgCGGGCGCuuuuGGGCCUUGAGgc -5'
21513 5' -56.3 NC_004812.1 + 145728 0.73 0.515483
Target:  5'- gGACGCCCgaacGCGgcGACCCGGGGCgcgCgGg -3'
miRNA:   3'- -UUGCGGG----CGCuuUUGGGCCUUGa--GgC- -5'
21513 5' -56.3 NC_004812.1 + 667 0.74 0.480081
Target:  5'- cGCGCCCgggcggcGCGAGGGgagcgcguccccgggUCCGGAGCUCCGu -3'
miRNA:   3'- uUGCGGG-------CGCUUUU---------------GGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 124999 0.74 0.477262
Target:  5'- cGCGCCgGCGccGAcGCCgaCGGAGCUCCGg -3'
miRNA:   3'- uUGCGGgCGC--UUuUGG--GCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 126531 0.74 0.458682
Target:  5'- cGCGCCCccGCGAGGGCCCGGccGC-CCGc -3'
miRNA:   3'- uUGCGGG--CGCUUUUGGGCCu-UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 112636 0.77 0.318474
Target:  5'- gGGCGaCCGCGggGACUCGG-ACUCCa -3'
miRNA:   3'- -UUGCgGGCGCuuUUGGGCCuUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 136175 0.75 0.414002
Target:  5'- uGGCGUCCGCGGAcgUCCGGGGCagggCCGc -3'
miRNA:   3'- -UUGCGGGCGCUUuuGGGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 67300 0.75 0.422724
Target:  5'- cGGCGCCgcagaacugCGCGAAgcgcGACgCCGGGGCUCCGc -3'
miRNA:   3'- -UUGCGG---------GCGCUU----UUG-GGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 142252 0.75 0.446813
Target:  5'- cGCGCCCGCGcggccggcaagcacGugcggcuCCCGGAGCUCCu -3'
miRNA:   3'- uUGCGGGCGC--------------Uuuu----GGGCCUUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 445 0.75 0.449537
Target:  5'- cGCGCCCGcCGcGAGCCCGGGcCgCCGg -3'
miRNA:   3'- uUGCGGGC-GCuUUUGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 23813 0.75 0.449537
Target:  5'- cGCGCCgCGCGGGgcggcGACCCGGGGCcggcCCGg -3'
miRNA:   3'- uUGCGG-GCGCUU-----UUGGGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 95011 0.74 0.458682
Target:  5'- -uCGCUCGCGcAGGugCUGGGGCUCCa -3'
miRNA:   3'- uuGCGGGCGC-UUUugGGCCUUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 22005 0.74 0.458682
Target:  5'- cGGCGCUC-CGAGAACCCGGGcauggcguACUCCc -3'
miRNA:   3'- -UUGCGGGcGCUUUUGGGCCU--------UGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.