miRNA display CGI


Results 1 - 20 of 454 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 50924 1.06 0.004696
Target:  5'- gAACGCCCGCGAAAACCCGGAACUCCGc -3'
miRNA:   3'- -UUGCGGGCGCUUUUGGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 84412 0.83 0.150063
Target:  5'- gGACGcCCCGCGAcGACCCGGGGCccCCGg -3'
miRNA:   3'- -UUGC-GGGCGCUuUUGGGCCUUGa-GGC- -5'
21513 5' -56.3 NC_004812.1 + 109983 0.78 0.283857
Target:  5'- gGGCGCCCGCGucGACCCGGAcgcguaUCCc -3'
miRNA:   3'- -UUGCGGGCGCuuUUGGGCCUug----AGGc -5'
21513 5' -56.3 NC_004812.1 + 112636 0.77 0.318474
Target:  5'- gGGCGaCCGCGggGACUCGG-ACUCCa -3'
miRNA:   3'- -UUGCgGGCGCuuUUGGGCCuUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 61821 0.77 0.340723
Target:  5'- gGGCGCCCGCGugGGCCC---ACUCCGg -3'
miRNA:   3'- -UUGCGGGCGCuuUUGGGccuUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 74711 0.77 0.348385
Target:  5'- -uCGCCCuGCGGgugcuggccuGGGCCCGGGACUUCGg -3'
miRNA:   3'- uuGCGGG-CGCU----------UUUGGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 63521 0.77 0.348385
Target:  5'- aAGCGCCCGCu-GGGCCCG-AGCUCCa -3'
miRNA:   3'- -UUGCGGGCGcuUUUGGGCcUUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 65952 0.77 0.356169
Target:  5'- aGACGCCCGCGAcgaGGACCUGGcgcGCUCg- -3'
miRNA:   3'- -UUGCGGGCGCU---UUUGGGCCu--UGAGgc -5'
21513 5' -56.3 NC_004812.1 + 58530 0.77 0.356169
Target:  5'- -cCGCCCcCGAuAGCCCGGGgcccgGCUCCGg -3'
miRNA:   3'- uuGCGGGcGCUuUUGGGCCU-----UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 123919 0.76 0.364075
Target:  5'- uGGCGCCCGCGGu--CCCGGGccgGC-CCGg -3'
miRNA:   3'- -UUGCGGGCGCUuuuGGGCCU---UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 82381 0.76 0.405391
Target:  5'- --gGCgCGCGGAGACCCGGGGCcCCu -3'
miRNA:   3'- uugCGgGCGCUUUUGGGCCUUGaGGc -5'
21513 5' -56.3 NC_004812.1 + 74306 0.75 0.414001
Target:  5'- -uCGCCCGCGucauGGGCCCGGuGACgCCGa -3'
miRNA:   3'- uuGCGGGCGCu---UUUGGGCC-UUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 136175 0.75 0.414002
Target:  5'- uGGCGUCCGCGGAcgUCCGGGGCagggCCGc -3'
miRNA:   3'- -UUGCGGGCGCUUuuGGGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 67300 0.75 0.422724
Target:  5'- cGGCGCCgcagaacugCGCGAAgcgcGACgCCGGGGCUCCGc -3'
miRNA:   3'- -UUGCGG---------GCGCUU----UUG-GGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 124459 0.75 0.430667
Target:  5'- gGGCGCCCcgccgcgGCGggGGCCCGGccguGGCgUCCGg -3'
miRNA:   3'- -UUGCGGG-------CGCuuUUGGGCC----UUG-AGGC- -5'
21513 5' -56.3 NC_004812.1 + 142252 0.75 0.446813
Target:  5'- cGCGCCCGCGcggccggcaagcacGugcggcuCCCGGAGCUCCu -3'
miRNA:   3'- uUGCGGGCGC--------------Uuuu----GGGCCUUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 31346 0.75 0.449537
Target:  5'- cGCGCCCGcCGcGAGCCCGGGcCgCCGg -3'
miRNA:   3'- uUGCGGGC-GCuUUUGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 23813 0.75 0.449537
Target:  5'- cGCGCCgCGCGGGgcggcGACCCGGGGCcggcCCGg -3'
miRNA:   3'- uUGCGG-GCGCUU-----UUGGGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 445 0.75 0.449537
Target:  5'- cGCGCCCGcCGcGAGCCCGGGcCgCCGg -3'
miRNA:   3'- uUGCGGGC-GCuUUUGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 113904 0.74 0.457762
Target:  5'- -cCGCCCGCG---GCCCgcguacaGGAGCUCCGc -3'
miRNA:   3'- uuGCGGGCGCuuuUGGG-------CCUUGAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.