miRNA display CGI


Results 1 - 20 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 105 0.71 0.676393
Target:  5'- gGGCGCgCGCGggG-CCgGGAGC-CCGc -3'
miRNA:   3'- -UUGCGgGCGCuuUuGGgCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 128 0.66 0.888306
Target:  5'- --nGCCCGgGAGcccGCCCGgGAGC-CCGc -3'
miRNA:   3'- uugCGGGCgCUUu--UGGGC-CUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 196 0.67 0.850948
Target:  5'- cGCGCgCCGCcggggGAGGGCCCGGGucgcgcaGCcCCGg -3'
miRNA:   3'- uUGCG-GGCG-----CUUUUGGGCCU-------UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 199 0.68 0.804993
Target:  5'- cGCGCCC-CGGAAACgCGGGgagggggggcccaagGCUCCc -3'
miRNA:   3'- uUGCGGGcGCUUUUGgGCCU---------------UGAGGc -5'
21513 5' -56.3 NC_004812.1 + 445 0.75 0.449537
Target:  5'- cGCGCCCGcCGcGAGCCCGGGcCgCCGg -3'
miRNA:   3'- uUGCGGGC-GCuUUUGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 530 0.69 0.764798
Target:  5'- --gGCCCGCGc--GCCCGGGccCUCCc -3'
miRNA:   3'- uugCGGGCGCuuuUGGGCCUu-GAGGc -5'
21513 5' -56.3 NC_004812.1 + 571 0.73 0.525235
Target:  5'- cGCGgCCGCGuGGAGCCgCGGGcgcgGCUCCGg -3'
miRNA:   3'- uUGCgGGCGC-UUUUGG-GCCU----UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 667 0.74 0.480081
Target:  5'- cGCGCCCgggcggcGCGAGGGgagcgcguccccgggUCCGGAGCUCCGu -3'
miRNA:   3'- uUGCGGG-------CGCUUUU---------------GGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 814 0.7 0.72628
Target:  5'- -cCGCCCGgcCGggGGuCCUGGGGgUCCGg -3'
miRNA:   3'- uuGCGGGC--GCuuUU-GGGCCUUgAGGC- -5'
21513 5' -56.3 NC_004812.1 + 1022 0.74 0.458681
Target:  5'- cGCGCCCccGCGAGGGCCCGGccGC-CCGc -3'
miRNA:   3'- uUGCGGG--CGCUUUUGGGCCu-UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 1210 0.66 0.901405
Target:  5'- cACGCCCGgcccggccCGGcc-CCCGGggUUCCu -3'
miRNA:   3'- uUGCGGGC--------GCUuuuGGGCCuuGAGGc -5'
21513 5' -56.3 NC_004812.1 + 1565 0.7 0.705507
Target:  5'- uACGCgCGCGAGccGCCCGGGucccccccgcacgGCUCCc -3'
miRNA:   3'- uUGCGgGCGCUUu-UGGGCCU-------------UGAGGc -5'
21513 5' -56.3 NC_004812.1 + 1899 0.68 0.834862
Target:  5'- -cCGCCCGCGGc-ACCCcguauauGGGccgagGCUCCGg -3'
miRNA:   3'- uuGCGGGCGCUuuUGGG-------CCU-----UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 2004 0.71 0.645958
Target:  5'- -cCGCCgGCGGucGCUCGGGGCgCCGa -3'
miRNA:   3'- uuGCGGgCGCUuuUGGGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 2135 0.66 0.887627
Target:  5'- --aGUCCGgGGAGGCCCcgcgggcGGGGCUCgCGg -3'
miRNA:   3'- uugCGGGCgCUUUUGGG-------CCUUGAG-GC- -5'
21513 5' -56.3 NC_004812.1 + 2173 0.67 0.874314
Target:  5'- gGACGCCCgGCccGAACCCauGGAGC-CCu -3'
miRNA:   3'- -UUGCGGG-CGcuUUUGGG--CCUUGaGGc -5'
21513 5' -56.3 NC_004812.1 + 2455 0.7 0.695515
Target:  5'- uGCGCCUcgccgcgGCGGAAGUCCGGGGCgCCGg -3'
miRNA:   3'- uUGCGGG-------CGCUUUUGGGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 2684 0.73 0.515483
Target:  5'- cGACGCgCGCGAAGACgCCGG-GC-CCGa -3'
miRNA:   3'- -UUGCGgGCGCUUUUG-GGCCuUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 2921 0.66 0.901405
Target:  5'- cGGCGCCgGCGAAGGCCaGGu-C-CCGc -3'
miRNA:   3'- -UUGCGGgCGCUUUUGGgCCuuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 3256 0.66 0.888306
Target:  5'- gGGCGCCCGCGcc--CCCGccGC-CCGa -3'
miRNA:   3'- -UUGCGGGCGCuuuuGGGCcuUGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.