miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 68886 0.66 0.830974
Target:  5'- cGGCGCCcgcgCCGCCUCcCgcUCgCGGUCgCCa -3'
miRNA:   3'- -UUGCGG----GGCGGAGaGauAG-GCUAG-GG- -5'
21518 5' -58.1 NC_004812.1 + 58916 0.66 0.822654
Target:  5'- cACGUCCC-CCUCgaag-CCGGUCUCg -3'
miRNA:   3'- uUGCGGGGcGGAGagauaGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 20634 0.66 0.805517
Target:  5'- cGCGCCgcaCCGCCUC-C--UCCGAgagcaggcUCCCg -3'
miRNA:   3'- uUGCGG---GGCGGAGaGauAGGCU--------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 92317 0.66 0.839119
Target:  5'- -uCGCCCCGCCgcccgCUCg--CgCGucUCCCc -3'
miRNA:   3'- uuGCGGGGCGGa----GAGauaG-GCu-AGGG- -5'
21518 5' -58.1 NC_004812.1 + 27918 0.66 0.812449
Target:  5'- cGCGCCgCCGCCUggaugcgCCaGGUCCCg -3'
miRNA:   3'- uUGCGG-GGCGGAgagaua-GG-CUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 4406 0.66 0.839119
Target:  5'- gGugGUCCCGCCgcaCUCgccugcCCGAggcggCCCc -3'
miRNA:   3'- -UugCGGGGCGGa--GAGaua---GGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 10302 0.66 0.805517
Target:  5'- cGACGCCUgagCGCCgUCUgCUG-CCG-UCCCa -3'
miRNA:   3'- -UUGCGGG---GCGG-AGA-GAUaGGCuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 32989 0.66 0.814166
Target:  5'- cGCGUCCUGCCUCcagCggaccUCCGccgCCCg -3'
miRNA:   3'- uUGCGGGGCGGAGa--Gau---AGGCua-GGG- -5'
21518 5' -58.1 NC_004812.1 + 14067 0.66 0.830974
Target:  5'- --aGCCCCGCCUCg----UCGAUCa- -3'
miRNA:   3'- uugCGGGGCGGAGagauaGGCUAGgg -5'
21518 5' -58.1 NC_004812.1 + 21940 0.66 0.829324
Target:  5'- -cCGCCCCccuccucgcgagcGCCUC-CUGcaggaccUCCGggCCCa -3'
miRNA:   3'- uuGCGGGG-------------CGGAGaGAU-------AGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 2088 0.66 0.814165
Target:  5'- cGCGUCCUGCCUCcagCggaccUCCGccgCCCg -3'
miRNA:   3'- uUGCGGGGCGGAGa--Gau---AGGCua-GGG- -5'
21518 5' -58.1 NC_004812.1 + 7080 0.66 0.820969
Target:  5'- aGGCGCCCUcucccuuuuuuuCCUCUCUGUCUc-UCCCc -3'
miRNA:   3'- -UUGCGGGGc-----------GGAGAGAUAGGcuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 47398 0.66 0.844712
Target:  5'- -uCGCCCCGCCggggcaccguaccaUCUaccugUGUCCGGUgCUg -3'
miRNA:   3'- uuGCGGGGCGG--------------AGAg----AUAGGCUAgGG- -5'
21518 5' -58.1 NC_004812.1 + 40870 0.66 0.805517
Target:  5'- aGGCGCCgcuuUCGCCUCUgUGacUCCGGcgccuugccgugUCCCc -3'
miRNA:   3'- -UUGCGG----GGCGGAGAgAU--AGGCU------------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 151641 0.66 0.839119
Target:  5'- cGCcCCCCGCCUCgccgccgCCGGccgCCCg -3'
miRNA:   3'- uUGcGGGGCGGAGagaua--GGCUa--GGG- -5'
21518 5' -58.1 NC_004812.1 + 64372 0.66 0.814166
Target:  5'- -cCGCCCCGCCaggccacacccUCUC---CCGGcCCCg -3'
miRNA:   3'- uuGCGGGGCGG-----------AGAGauaGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 112295 0.66 0.814165
Target:  5'- -cCGCCCCGugcCCUCcCUcUCCGccCCCg -3'
miRNA:   3'- uuGCGGGGC---GGAGaGAuAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 96051 0.66 0.830974
Target:  5'- cAUGCUCCGCCggccCUCccUCuCGAUCCg -3'
miRNA:   3'- uUGCGGGGCGGa---GAGauAG-GCUAGGg -5'
21518 5' -58.1 NC_004812.1 + 105527 0.66 0.847082
Target:  5'- cGCGCUCgGCCUCguaccgCCGGcguuuUCCCg -3'
miRNA:   3'- uUGCGGGgCGGAGagaua-GGCU-----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 145824 0.66 0.805517
Target:  5'- --gGCCCCGCCggagCgaaggCCGggCCCg -3'
miRNA:   3'- uugCGGGGCGGa---GagauaGGCuaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.