miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 48636 1.1 0.00164
Target:  5'- gAACGCCCCGCCUCUCUAUCCGAUCCCg -3'
miRNA:   3'- -UUGCGGGGCGGAGAGAUAGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 61971 0.8 0.167109
Target:  5'- cGCGCCCgCGCC-CUCgucgCCGGUCCCa -3'
miRNA:   3'- uUGCGGG-GCGGaGAGaua-GGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 20689 0.78 0.218998
Target:  5'- gGACGCCgCCGCCUg-CU-UCCGGUCCCu -3'
miRNA:   3'- -UUGCGG-GGCGGAgaGAuAGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 41895 0.75 0.355618
Target:  5'- gAGCGCCUggcggaggGCCUCUCgacggcauUCCGGUCCCg -3'
miRNA:   3'- -UUGCGGGg-------CGGAGAGau------AGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 121041 0.75 0.363438
Target:  5'- uGC-CCCCGCCgcccccuccCUCUAUCCGggCCCc -3'
miRNA:   3'- uUGcGGGGCGGa--------GAGAUAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 61978 0.75 0.363438
Target:  5'- aGGCGCCCgCGCCcgUCUC--UCCGcgCCCa -3'
miRNA:   3'- -UUGCGGG-GCGG--AGAGauAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 55718 0.74 0.379431
Target:  5'- cGCGCCCCGCCUCgggggCCGcggcgCCCu -3'
miRNA:   3'- uUGCGGGGCGGAGagauaGGCua---GGG- -5'
21518 5' -58.1 NC_004812.1 + 151853 0.74 0.395888
Target:  5'- cGCGCCcgucuCCGCCUCUCUcUCUGucuccUCCCg -3'
miRNA:   3'- uUGCGG-----GGCGGAGAGAuAGGCu----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 120952 0.74 0.395888
Target:  5'- cGCGCCCgucucCGCCUCUCUcUCUGucuccUCCCg -3'
miRNA:   3'- uUGCGGG-----GCGGAGAGAuAGGCu----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 3887 0.73 0.438983
Target:  5'- aAGCGCCCgGCCUC-CgccUCCGAggccgCCCc -3'
miRNA:   3'- -UUGCGGGgCGGAGaGau-AGGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 34788 0.73 0.438983
Target:  5'- aAGCGCCCgGCCUC-CgccUCCGAggccgCCCc -3'
miRNA:   3'- -UUGCGGGgCGGAGaGau-AGGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 58008 0.72 0.475317
Target:  5'- cGACGCCCCGCC-CUCggcgaUGAUgCCg -3'
miRNA:   3'- -UUGCGGGGCGGaGAGauag-GCUAgGG- -5'
21518 5' -58.1 NC_004812.1 + 155319 0.72 0.484634
Target:  5'- cGGCGCCCCGCCUCcggggaccCUGggggCCGGaaucugCCCg -3'
miRNA:   3'- -UUGCGGGGCGGAGa-------GAUa---GGCUa-----GGG- -5'
21518 5' -58.1 NC_004812.1 + 29811 0.72 0.484635
Target:  5'- cGGCGCCCCGCCUCcggggaccCUGggggCCGGaaucugCCCg -3'
miRNA:   3'- -UUGCGGGGCGGAGa-------GAUa---GGCUa-----GGG- -5'
21518 5' -58.1 NC_004812.1 + 76715 0.72 0.503525
Target:  5'- cAAUGCCCCGCCcacgacUUUUUcgCCGggCCCu -3'
miRNA:   3'- -UUGCGGGGCGG------AGAGAuaGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 145540 0.72 0.503525
Target:  5'- cGGCGCCCCGgUUCgCg--CUGGUCCCg -3'
miRNA:   3'- -UUGCGGGGCgGAGaGauaGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 116689 0.72 0.503525
Target:  5'- cACGCCCCacccGCCUCUCUugucgCCccaGUCCCc -3'
miRNA:   3'- uUGCGGGG----CGGAGAGAua---GGc--UAGGG- -5'
21518 5' -58.1 NC_004812.1 + 55667 0.72 0.503525
Target:  5'- cGCGCCCCGCCacgUCggcccagCUcUCCGG-CCCg -3'
miRNA:   3'- uUGCGGGGCGG---AGa------GAuAGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 138752 0.72 0.503525
Target:  5'- -uCGCCCCcgcgguGCCUCUgUGgcgCuCGAUCCCg -3'
miRNA:   3'- uuGCGGGG------CGGAGAgAUa--G-GCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 124871 0.72 0.503525
Target:  5'- cGCGCCCCcgccccgcGCCUCUCgg-CCGAgCUCg -3'
miRNA:   3'- uUGCGGGG--------CGGAGAGauaGGCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.