miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 120549 0.7 0.621994
Target:  5'- gAGC-CCCCGCCccUCUCUGcuUCUGG-CCCg -3'
miRNA:   3'- -UUGcGGGGCGG--AGAGAU--AGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 123347 0.71 0.57185
Target:  5'- -cCGUCCCGCCUCUC--UCCGGcggggacgcgCCCc -3'
miRNA:   3'- uuGCGGGGCGGAGAGauAGGCUa---------GGG- -5'
21518 5' -58.1 NC_004812.1 + 27926 0.71 0.57185
Target:  5'- gGGCGCCCCGCCUCcCggagaccgCCGG-CCa -3'
miRNA:   3'- -UUGCGGGGCGGAGaGaua-----GGCUaGGg -5'
21518 5' -58.1 NC_004812.1 + 69766 0.7 0.581822
Target:  5'- uGCGCUCgCGCCUCUCgccUCCGuguggucuuucUCCCa -3'
miRNA:   3'- uUGCGGG-GCGGAGAGau-AGGCu----------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 106090 0.7 0.581822
Target:  5'- --gGCCUgCGCCUcCUCUGUCCGAcugagUCUCg -3'
miRNA:   3'- uugCGGG-GCGGA-GAGAUAGGCU-----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 3841 0.7 0.591829
Target:  5'- --gGCCCCGCCcCUCUGcgCCGugGUCgCCg -3'
miRNA:   3'- uugCGGGGCGGaGAGAUa-GGC--UAG-GG- -5'
21518 5' -58.1 NC_004812.1 + 33139 0.7 0.60086
Target:  5'- cGCGCCCCucCCUCUCUccccccgcagggcAUCCGGggCCa -3'
miRNA:   3'- uUGCGGGGc-GGAGAGA-------------UAGGCUagGG- -5'
21518 5' -58.1 NC_004812.1 + 126839 0.7 0.601865
Target:  5'- cGCGCCCCGCCcCUCc--CCGGUUUg -3'
miRNA:   3'- uUGCGGGGCGGaGAGauaGGCUAGGg -5'
21518 5' -58.1 NC_004812.1 + 143324 0.7 0.611922
Target:  5'- gGACGCCCCGCCg--Cg--CCGAggCCUc -3'
miRNA:   3'- -UUGCGGGGCGGagaGauaGGCUa-GGG- -5'
21518 5' -58.1 NC_004812.1 + 133212 0.71 0.561919
Target:  5'- gGACGCCCguCGCCggacgCUCgcccgccgggAUCCGcgCCCg -3'
miRNA:   3'- -UUGCGGG--GCGGa----GAGa---------UAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 33076 0.71 0.532435
Target:  5'- -cCGCCCCGcCCUCUCcuccccgCCGcgcUCCCg -3'
miRNA:   3'- uuGCGGGGC-GGAGAGaua----GGCu--AGGG- -5'
21518 5' -58.1 NC_004812.1 + 127328 0.72 0.513089
Target:  5'- cGCGCCUCGCCUCUCc-UCCc--CCCu -3'
miRNA:   3'- uUGCGGGGCGGAGAGauAGGcuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 61978 0.75 0.363438
Target:  5'- aGGCGCCCgCGCCcgUCUC--UCCGcgCCCa -3'
miRNA:   3'- -UUGCGGG-GCGG--AGAGauAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 55718 0.74 0.379431
Target:  5'- cGCGCCCCGCCUCgggggCCGcggcgCCCu -3'
miRNA:   3'- uUGCGGGGCGGAGagauaGGCua---GGG- -5'
21518 5' -58.1 NC_004812.1 + 120952 0.74 0.395888
Target:  5'- cGCGCCCgucucCGCCUCUCUcUCUGucuccUCCCg -3'
miRNA:   3'- uUGCGGG-----GCGGAGAGAuAGGCu----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 3887 0.73 0.438983
Target:  5'- aAGCGCCCgGCCUC-CgccUCCGAggccgCCCc -3'
miRNA:   3'- -UUGCGGGgCGGAGaGau-AGGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 58008 0.72 0.475317
Target:  5'- cGACGCCCCGCC-CUCggcgaUGAUgCCg -3'
miRNA:   3'- -UUGCGGGGCGGaGAGauag-GCUAgGG- -5'
21518 5' -58.1 NC_004812.1 + 155319 0.72 0.484634
Target:  5'- cGGCGCCCCGCCUCcggggaccCUGggggCCGGaaucugCCCg -3'
miRNA:   3'- -UUGCGGGGCGGAGa-------GAUa---GGCUa-----GGG- -5'
21518 5' -58.1 NC_004812.1 + 138752 0.72 0.503525
Target:  5'- -uCGCCCCcgcgguGCCUCUgUGgcgCuCGAUCCCg -3'
miRNA:   3'- uuGCGGGG------CGGAGAgAUa--G-GCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 55667 0.72 0.503525
Target:  5'- cGCGCCCCGCCacgUCggcccagCUcUCCGG-CCCg -3'
miRNA:   3'- uUGCGGGGCGG---AGa------GAuAGGCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.