miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 285 0.68 0.702188
Target:  5'- cGCGCUCCGCCg--CcGUCCGGccgcgCCCg -3'
miRNA:   3'- uUGCGGGGCGGagaGaUAGGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 380 0.68 0.702188
Target:  5'- -cCGCCCCGCUcuccgUCUCUccccCCcGUCCCu -3'
miRNA:   3'- uuGCGGGGCGG-----AGAGAua--GGcUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 757 0.69 0.692276
Target:  5'- cGCGCCUCGCCUCcCggcgCCGcgggCCCc -3'
miRNA:   3'- uUGCGGGGCGGAGaGaua-GGCua--GGG- -5'
21518 5' -58.1 NC_004812.1 + 1331 0.7 0.601865
Target:  5'- cGCGCCCCGCCcCUCc--CCGGUUUg -3'
miRNA:   3'- uUGCGGGGCGGaGAGauaGGCUAGGg -5'
21518 5' -58.1 NC_004812.1 + 1820 0.72 0.51309
Target:  5'- cGCGCCUCGCCUCUCc-UCCc--CCCu -3'
miRNA:   3'- uUGCGGGGCGGAGAGauAGGcuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 2088 0.66 0.814165
Target:  5'- cGCGUCCUGCCUCcagCggaccUCCGccgCCCg -3'
miRNA:   3'- uUGCGGGGCGGAGa--Gau---AGGCua-GGG- -5'
21518 5' -58.1 NC_004812.1 + 3474 0.69 0.659267
Target:  5'- cGCGCCCCGCCgccgagccccCCGcgCCCg -3'
miRNA:   3'- uUGCGGGGCGGagagaua---GGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 3841 0.7 0.591829
Target:  5'- --gGCCCCGCCcCUCUGcgCCGugGUCgCCg -3'
miRNA:   3'- uugCGGGGCGGaGAGAUa-GGC--UAG-GG- -5'
21518 5' -58.1 NC_004812.1 + 3887 0.73 0.438983
Target:  5'- aAGCGCCCgGCCUC-CgccUCCGAggccgCCCc -3'
miRNA:   3'- -UUGCGGGgCGGAGaGau-AGGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 4013 0.67 0.796715
Target:  5'- -cCGCUCCGCCUC-C--UCCGcGUCCUc -3'
miRNA:   3'- uuGCGGGGCGGAGaGauAGGC-UAGGG- -5'
21518 5' -58.1 NC_004812.1 + 4406 0.66 0.839119
Target:  5'- gGugGUCCCGCCgcaCUCgccugcCCGAggcggCCCc -3'
miRNA:   3'- -UugCGGGGCGGa--GAGaua---GGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 7080 0.66 0.820969
Target:  5'- aGGCGCCCUcucccuuuuuuuCCUCUCUGUCUc-UCCCc -3'
miRNA:   3'- -UUGCGGGGc-----------GGAGAGAUAGGcuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 7704 0.71 0.56192
Target:  5'- gGACGCCCguCGCCggacgCUCgcccgccgggAUCCGcgCCCg -3'
miRNA:   3'- -UUGCGGG--GCGGa----GAGa---------UAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 7872 0.69 0.682315
Target:  5'- cGGCGCCCCGCgCgUCgc-GUCgCGAUCUCg -3'
miRNA:   3'- -UUGCGGGGCG-G-AGagaUAG-GCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 10302 0.66 0.805517
Target:  5'- cGACGCCUgagCGCCgUCUgCUG-CCG-UCCCa -3'
miRNA:   3'- -UUGCGGG---GCGG-AGA-GAUaGGCuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 10588 0.68 0.731547
Target:  5'- cACGcCCCCGCCUCU---UCC--UCCCc -3'
miRNA:   3'- uUGC-GGGGCGGAGAgauAGGcuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 11663 0.67 0.76948
Target:  5'- cGGCGCCUCgGCCUCUCcccCCGGggggcUUCCg -3'
miRNA:   3'- -UUGCGGGG-CGGAGAGauaGGCU-----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 14067 0.66 0.830974
Target:  5'- --aGCCCCGCCUCg----UCGAUCa- -3'
miRNA:   3'- uugCGGGGCGGAGagauaGGCUAGgg -5'
21518 5' -58.1 NC_004812.1 + 14305 0.71 0.532435
Target:  5'- cGCGCCCCGCCg--Cg--CCGG-CCCg -3'
miRNA:   3'- uUGCGGGGCGGagaGauaGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 15970 0.67 0.778689
Target:  5'- gGACGCCCCGCggCcggCggcgCCGAcCCCg -3'
miRNA:   3'- -UUGCGGGGCGgaGa--Gaua-GGCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.