miRNA display CGI


Results 1 - 20 of 427 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 156501 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 156500 0.67 0.928592
Target:  5'- -cCGGGCGGGCucccGGcccCGCGCGCGCc -3'
miRNA:   3'- cuGUCUGCUUGua--CCcu-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156455 0.69 0.840427
Target:  5'- cGGCGGgccGCGGGCGcGGcGGCGCggcgccacGCGCGCg -3'
miRNA:   3'- -CUGUC---UGCUUGUaCC-CUGCG--------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156325 0.7 0.797272
Target:  5'- cGCGGcCGGACGgcgGcGGA-GCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGUa--C-CCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156269 0.69 0.871566
Target:  5'- aGGguGGCGAGCGcGuGGACGCaccucccgACGUGCu -3'
miRNA:   3'- -CUguCUGCUUGUaC-CCUGCG--------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156163 0.68 0.89925
Target:  5'- cGGCGGccCGGGCucgcgGcGGGCGCGCGCGa -3'
miRNA:   3'- -CUGUCu-GCUUGua---C-CCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 156136 0.79 0.364726
Target:  5'- uGACGGgccgcGCGGACGcGGGGCGCgggACGCGCg -3'
miRNA:   3'- -CUGUC-----UGCUUGUaCCCUGCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156136 0.66 0.955898
Target:  5'- aGCAGGC--GCGUGcGcACGCAgGCGCg -3'
miRNA:   3'- cUGUCUGcuUGUAC-CcUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 156078 0.68 0.89925
Target:  5'- aGGCGGGaGGGCccGGG-CGCGCGgGCc -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCuGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 156052 0.69 0.871566
Target:  5'- gGACGGGCGGGCGUcGcGcGGCGCGuCGcCGCc -3'
miRNA:   3'- -CUGUCUGCUUGUA-C-C-CUGCGU-GC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 155917 0.73 0.659075
Target:  5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3'
miRNA:   3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 155722 0.81 0.25794
Target:  5'- gGGgGGugGGGgGUGGGGgGCGCGCGCg -3'
miRNA:   3'- -CUgUCugCUUgUACCCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155558 0.75 0.537734
Target:  5'- gGGCGGGgGAGgGgggaGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUgCUUgUa---CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 155270 0.69 0.856406
Target:  5'- cGGCGGACGccaAACcgGGGAgGgGCgggGCGCg -3'
miRNA:   3'- -CUGUCUGC---UUGuaCCCUgCgUG---CGCG- -5'
21519 3' -54.3 NC_004812.1 + 155212 0.71 0.759991
Target:  5'- uGGCGG-CGAGag-GGGGCGCG-GCGCg -3'
miRNA:   3'- -CUGUCuGCUUguaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155041 0.66 0.963143
Target:  5'- --gGGGgGGACccGGGcggcuCGCGCGCGUa -3'
miRNA:   3'- cugUCUgCUUGuaCCCu----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 154970 0.8 0.297278
Target:  5'- gGACGGGCGGGCcgcgcGGGACcCGCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGua---CCCUGcGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 154803 0.73 0.680546
Target:  5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3'
miRNA:   3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 154751 0.67 0.917574
Target:  5'- cGCGGAgGAGCGggccGGGGCuGCGCGgGg -3'
miRNA:   3'- cUGUCUgCUUGUa---CCCUG-CGUGCgCg -5'
21519 3' -54.3 NC_004812.1 + 153863 0.66 0.963143
Target:  5'- uGCAGAgCGGGCAgcUGuuGCGCAUGgGCa -3'
miRNA:   3'- cUGUCU-GCUUGU--ACccUGCGUGCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.