miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 48285 1.13 0.002574
Target:  5'- cGACAGACGAACAUGGGACGCACGCGCg -3'
miRNA:   3'- -CUGUCUGCUUGUACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 114311 0.76 0.508136
Target:  5'- uGGCGGcgcccaggaACGGACGcGGGGCGCcCGCGCu -3'
miRNA:   3'- -CUGUC---------UGCUUGUaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30049 0.75 0.537734
Target:  5'- gGGCGGGgGAGgGgggaGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUgCUUgUa---CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 97679 0.66 0.964485
Target:  5'- -cCAGGCGGcccccgccgagaccgGCuucgaggGGGACGUgGCGCGCg -3'
miRNA:   3'- cuGUCUGCU---------------UGua-----CCCUGCG-UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30992 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 101025 0.81 0.290411
Target:  5'- cGCuGGCGAGCcUGGGGCGCuGCGUGCg -3'
miRNA:   3'- cUGuCUGCUUGuACCCUGCG-UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30628 0.79 0.364726
Target:  5'- uGACGGgccgcGCGGACGcGGGGCGCgggACGCGCg -3'
miRNA:   3'- -CUGUC-----UGCUUGUaCCCUGCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 124240 0.79 0.364726
Target:  5'- cGGCGGGCcuGGCggGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUGc-UUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 151914 0.77 0.421396
Target:  5'- cGCGcGGCGGGCcgGGGGCGCuccccucggcgccgGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCUGCG--------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 3576 0.76 0.498422
Target:  5'- gGGCAGGCGGcgGCGgcgGcGGGCGgGCGCGCc -3'
miRNA:   3'- -CUGUCUGCU--UGUa--C-CCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 26194 0.76 0.488791
Target:  5'- cGCAG-CGAGC--GGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGuaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 47032 0.78 0.397921
Target:  5'- cGAUAGACGGGCAgcgGGGuuuGCGUGCGgGCg -3'
miRNA:   3'- -CUGUCUGCUUGUa--CCC---UGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 65436 0.83 0.196971
Target:  5'- cGCAGGCGAGCGUGGacGACGUGCuGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUACC--CUGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 135590 0.76 0.488791
Target:  5'- cGCGGccucaACGGcCcgGUGGGGCGCACGCGCu -3'
miRNA:   3'- cUGUC-----UGCUuG--UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35226 0.82 0.227381
Target:  5'- aGACGGGCGAcaucgggGCcuacguggugcucGUGGGGCGCGCGUGCa -3'
miRNA:   3'- -CUGUCUGCU-------UG-------------UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 59659 0.78 0.397921
Target:  5'- aGACGGACGGGCcgGcgcGGGCGCcgcguugccGCGCGCg -3'
miRNA:   3'- -CUGUCUGCUUGuaC---CCUGCG---------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35534 0.76 0.488791
Target:  5'- gGGCGGGgGGGC--GGGACGCcCGCGCg -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 153645 0.75 0.537734
Target:  5'- uGCGGGCGGGCG-GGGAgaGgGCGCGCa -3'
miRNA:   3'- cUGUCUGCUUGUaCCCUg-CgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30214 0.81 0.25794
Target:  5'- gGGgGGugGGGgGUGGGGgGCGCGCGCg -3'
miRNA:   3'- -CUgUCugCUUgUACCCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29462 0.8 0.297278
Target:  5'- gGACGGGCGGGCcgcgcGGGACcCGCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGua---CCCUGcGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.