miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 13056 0.66 0.795147
Target:  5'- --gGUCGCccccagcgacaGgAGCUCGCGgguCAGCGCCc -3'
miRNA:   3'- gaaCAGCG-----------CgUCGAGCGC---GUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 128055 0.66 0.786171
Target:  5'- -----gGCGCGGCgguacUCGCGCGGCGgCa -3'
miRNA:   3'- gaacagCGCGUCG-----AGCGCGUCGUgGc -5'
21529 3' -58.5 NC_004812.1 + 80986 0.66 0.786171
Target:  5'- --cGgCGCGCuggucggucguGCUCGCGauCGGCGCCGc -3'
miRNA:   3'- gaaCaGCGCGu----------CGAGCGC--GUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 96936 0.66 0.795147
Target:  5'- --cG-CGCGCGGCaa-CGCGGCGCCc -3'
miRNA:   3'- gaaCaGCGCGUCGagcGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 4346 0.66 0.786171
Target:  5'- ----aCGUGguGCUCGUGgGGCGCgCGu -3'
miRNA:   3'- gaacaGCGCguCGAGCGCgUCGUG-GC- -5'
21529 3' -58.5 NC_004812.1 + 106509 0.66 0.80398
Target:  5'- --gGUC-CGCGGC--GCGgGGCGCCGg -3'
miRNA:   3'- gaaCAGcGCGUCGagCGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 63370 0.66 0.795147
Target:  5'- uUUGUCGCGgAuCUCgagGCGCGGgGCCu -3'
miRNA:   3'- gAACAGCGCgUcGAG---CGCGUCgUGGc -5'
21529 3' -58.5 NC_004812.1 + 152963 0.66 0.795147
Target:  5'- --gGcCGaCGCAGacgCGgGCGGCGCCGc -3'
miRNA:   3'- gaaCaGC-GCGUCga-GCgCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 46890 0.66 0.795147
Target:  5'- --cGUCGCGCcugcccagccGGCcgccaGCGCGGCGgCGg -3'
miRNA:   3'- gaaCAGCGCG----------UCGag---CGCGUCGUgGC- -5'
21529 3' -58.5 NC_004812.1 + 66754 0.66 0.786171
Target:  5'- --aG-CGCGcCGGcCUCGCGCacgaauguggcgAGCGCCGu -3'
miRNA:   3'- gaaCaGCGC-GUC-GAGCGCG------------UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 31744 0.66 0.786171
Target:  5'- --aGgCGCGgGGCggggGCGCGGCGCCc -3'
miRNA:   3'- gaaCaGCGCgUCGag--CGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 73913 0.66 0.80398
Target:  5'- --aGUCGCGCcagcccGGCUgGCGgUGGCGCaCGa -3'
miRNA:   3'- gaaCAGCGCG------UCGAgCGC-GUCGUG-GC- -5'
21529 3' -58.5 NC_004812.1 + 48633 0.66 0.786171
Target:  5'- -cUGUCGCuGCAGUcgugCGgGCGGCugUa -3'
miRNA:   3'- gaACAGCG-CGUCGa---GCgCGUCGugGc -5'
21529 3' -58.5 NC_004812.1 + 19978 0.66 0.786171
Target:  5'- --cGUCGagGCgaucgacaccucGGCaaagCGCGCGGCGCCGu -3'
miRNA:   3'- gaaCAGCg-CG------------UCGa---GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 128241 0.66 0.795147
Target:  5'- -----gGCGCGGCgcaggucgCGCGCGGCggGCCa -3'
miRNA:   3'- gaacagCGCGUCGa-------GCGCGUCG--UGGc -5'
21529 3' -58.5 NC_004812.1 + 125228 0.66 0.794256
Target:  5'- ---uUCGgGCAGCagGCGCGugcgcacgcaggcGCGCCGg -3'
miRNA:   3'- gaacAGCgCGUCGagCGCGU-------------CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 22175 0.66 0.821185
Target:  5'- --cGcCGUGCGGaUCgGCGgAGCGCCGg -3'
miRNA:   3'- gaaCaGCGCGUCgAG-CGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 93306 0.66 0.795147
Target:  5'- -cUGgcgCGCGguGCUCaaGCGGCuCCa -3'
miRNA:   3'- gaACa--GCGCguCGAGcgCGUCGuGGc -5'
21529 3' -58.5 NC_004812.1 + 121011 0.66 0.803104
Target:  5'- ---cUCGCGCGGCgggccggggGCGCuccccucGGCGCCGg -3'
miRNA:   3'- gaacAGCGCGUCGag-------CGCG-------UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 46584 0.66 0.795147
Target:  5'- --aG-CGCGCGGC-CGgGUAGCACa- -3'
miRNA:   3'- gaaCaGCGCGUCGaGCgCGUCGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.