miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 42010 1.1 0.001496
Target:  5'- aCUUGUCGCGCAGCUCGCGCAGCACCGg -3'
miRNA:   3'- -GAACAGCGCGUCGAGCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 19693 0.83 0.099669
Target:  5'- --cGUCcaGCGCGGCggCGCGCGGCGCCGg -3'
miRNA:   3'- gaaCAG--CGCGUCGa-GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 121547 0.82 0.116417
Target:  5'- --cGUCGCGCGGCUgguggCGCGCGGCAuCCGc -3'
miRNA:   3'- gaaCAGCGCGUCGA-----GCGCGUCGU-GGC- -5'
21529 3' -58.5 NC_004812.1 + 3625 0.82 0.125744
Target:  5'- gCUUG-CGCGcCGGCgggCGCGCGGCGCCGc -3'
miRNA:   3'- -GAACaGCGC-GUCGa--GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 129133 0.82 0.125744
Target:  5'- gCUUG-CGCGcCGGCgggCGCGCGGCGCCGc -3'
miRNA:   3'- -GAACaGCGC-GUCGa--GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 112930 0.8 0.158019
Target:  5'- --aGgcaGCGCGGCcCGCGCAGCGCCGu -3'
miRNA:   3'- gaaCag-CGCGUCGaGCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 35678 0.77 0.228573
Target:  5'- -cUGUgGCGCcGCgUGCGCGGCGCCGg -3'
miRNA:   3'- gaACAgCGCGuCGaGCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 56313 0.77 0.239777
Target:  5'- ----aCGCGCAGCgcgCGCGCGcGCGCCGc -3'
miRNA:   3'- gaacaGCGCGUCGa--GCGCGU-CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 89313 0.77 0.245549
Target:  5'- ---uUCGCGCAGUUC-UGCGGCGCCGg -3'
miRNA:   3'- gaacAGCGCGUCGAGcGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 21158 0.76 0.269794
Target:  5'- --cGgCGCGCAGCUCGCGgaggaGGCGCUGg -3'
miRNA:   3'- gaaCaGCGCGUCGAGCGCg----UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 43837 0.76 0.269794
Target:  5'- --cGcCGCGCGGCUCGCG--GCGCCGa -3'
miRNA:   3'- gaaCaGCGCGUCGAGCGCguCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 128164 0.76 0.27615
Target:  5'- --gGUCGCGCGGCgcuGCGuCGGCGCCu -3'
miRNA:   3'- gaaCAGCGCGUCGag-CGC-GUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 12495 0.76 0.295932
Target:  5'- --aGcCGUGCuGgUCGCGCAGCACCa -3'
miRNA:   3'- gaaCaGCGCGuCgAGCGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 55915 0.76 0.295932
Target:  5'- --gGUCGCGCuGCgacacgccCGCGCgAGCGCCGg -3'
miRNA:   3'- gaaCAGCGCGuCGa-------GCGCG-UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 19520 0.75 0.302767
Target:  5'- ---cUCGCGC-GCgaacCGCGCGGCGCCGg -3'
miRNA:   3'- gaacAGCGCGuCGa---GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 15975 0.75 0.302767
Target:  5'- --cGcCGCGCGGCggCGCGUcuacAGCACCGg -3'
miRNA:   3'- gaaCaGCGCGUCGa-GCGCG----UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 3868 0.75 0.309722
Target:  5'- --cGUCGCGCgugcggcgcAGCUCGCGCAGCcagagGCgCGg -3'
miRNA:   3'- gaaCAGCGCG---------UCGAGCGCGUCG-----UG-GC- -5'
21529 3' -58.5 NC_004812.1 + 129376 0.75 0.309722
Target:  5'- --cGUCGCGCgugcggcgcAGCUCGCGCAGCcagagGCgCGg -3'
miRNA:   3'- gaaCAGCGCG---------UCGAGCGCGUCG-----UG-GC- -5'
21529 3' -58.5 NC_004812.1 + 20308 0.75 0.316799
Target:  5'- -----gGCGCAGCgcgCGCGCAgGCACCGc -3'
miRNA:   3'- gaacagCGCGUCGa--GCGCGU-CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 74745 0.75 0.316799
Target:  5'- -cUGgagcgCGCGCAGCUgcucgCGCGCGGCcCCGa -3'
miRNA:   3'- gaACa----GCGCGUCGA-----GCGCGUCGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.