miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 104049 0.72 0.446109
Target:  5'- --cGUCGgGgAGCUCG-GCGGUGCCGg -3'
miRNA:   3'- gaaCAGCgCgUCGAGCgCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 95755 0.75 0.331315
Target:  5'- --cGUCGCgGCGGC-CGCGCA-CACCGa -3'
miRNA:   3'- gaaCAGCG-CGUCGaGCGCGUcGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 130395 0.74 0.385904
Target:  5'- --cGUCGCGCccggccacGGCggCGCGCGcGCGCCGc -3'
miRNA:   3'- gaaCAGCGCG--------UCGa-GCGCGU-CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 76937 0.73 0.394173
Target:  5'- --aGUCGgGgAGCggGCGCAGCACCc -3'
miRNA:   3'- gaaCAGCgCgUCGagCGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 127834 0.73 0.402555
Target:  5'- --cG-CGCGCAGaaggCGCGCAGCGCgGg -3'
miRNA:   3'- gaaCaGCGCGUCga--GCGCGUCGUGgC- -5'
21529 3' -58.5 NC_004812.1 + 127877 0.73 0.419654
Target:  5'- --cGgcgCGCGCGGCgUCGCGgucCAGCGCCa -3'
miRNA:   3'- gaaCa--GCGCGUCG-AGCGC---GUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 81740 0.72 0.437186
Target:  5'- --cG-CGUGCAGCUCGCggaGCAGCugCu -3'
miRNA:   3'- gaaCaGCGCGUCGAGCG---CGUCGugGc -5'
21529 3' -58.5 NC_004812.1 + 115417 0.72 0.437186
Target:  5'- ----cCGCGCGGCgcgccgaccgGCGCGGCGCCGa -3'
miRNA:   3'- gaacaGCGCGUCGag--------CGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 69461 0.72 0.440743
Target:  5'- -cUGUCGCGCGGCcgagcacgcccuggCGCGCcGcCGCCGa -3'
miRNA:   3'- gaACAGCGCGUCGa-------------GCGCGuC-GUGGC- -5'
21529 3' -58.5 NC_004812.1 + 55568 0.75 0.331315
Target:  5'- --cGcCGCGCuGCUCGCGCacgcAGCGCCc -3'
miRNA:   3'- gaaCaGCGCGuCGAGCGCG----UCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 74745 0.75 0.316799
Target:  5'- -cUGgagcgCGCGCAGCUgcucgCGCGCGGCcCCGa -3'
miRNA:   3'- gaACa----GCGCGUCGA-----GCGCGUCGuGGC- -5'
21529 3' -58.5 NC_004812.1 + 20308 0.75 0.316799
Target:  5'- -----gGCGCAGCgcgCGCGCAgGCACCGc -3'
miRNA:   3'- gaacagCGCGUCGa--GCGCGU-CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 129133 0.82 0.125744
Target:  5'- gCUUG-CGCGcCGGCgggCGCGCGGCGCCGc -3'
miRNA:   3'- -GAACaGCGC-GUCGa--GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 112930 0.8 0.158019
Target:  5'- --aGgcaGCGCGGCcCGCGCAGCGCCGu -3'
miRNA:   3'- gaaCag-CGCGUCGaGCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 35678 0.77 0.228573
Target:  5'- -cUGUgGCGCcGCgUGCGCGGCGCCGg -3'
miRNA:   3'- gaACAgCGCGuCGaGCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 56313 0.77 0.239777
Target:  5'- ----aCGCGCAGCgcgCGCGCGcGCGCCGc -3'
miRNA:   3'- gaacaGCGCGUCGa--GCGCGU-CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 21158 0.76 0.269794
Target:  5'- --cGgCGCGCAGCUCGCGgaggaGGCGCUGg -3'
miRNA:   3'- gaaCaGCGCGUCGAGCGCg----UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 12495 0.76 0.295932
Target:  5'- --aGcCGUGCuGgUCGCGCAGCACCa -3'
miRNA:   3'- gaaCaGCGCGuCgAGCGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 19520 0.75 0.302767
Target:  5'- ---cUCGCGC-GCgaacCGCGCGGCGCCGg -3'
miRNA:   3'- gaacAGCGCGuCGa---GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 129376 0.75 0.309722
Target:  5'- --cGUCGCGCgugcggcgcAGCUCGCGCAGCcagagGCgCGg -3'
miRNA:   3'- gaaCAGCGCG---------UCGAGCGCGUCG-----UG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.