miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 57 0.72 0.473468
Target:  5'- -----gGCGCGGCg-GCGCGGCGCCa -3'
miRNA:   3'- gaacagCGCGUCGagCGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 130 0.68 0.690445
Target:  5'- ---cUCGCGaguGCgcgCGCGUGGCGCCGc -3'
miRNA:   3'- gaacAGCGCgu-CGa--GCGCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 220 0.69 0.640262
Target:  5'- --gGUCGCGCAGCccCGgccccCGCGGCcCCGc -3'
miRNA:   3'- gaaCAGCGCGUCGa-GC-----GCGUCGuGGC- -5'
21529 3' -58.5 NC_004812.1 + 426 0.69 0.620089
Target:  5'- --cG-CGCGCGGCgcucUCGCGC-GCGCCc -3'
miRNA:   3'- gaaCaGCGCGUCG----AGCGCGuCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 564 0.68 0.710247
Target:  5'- --cGgcgCGCGCGGC-CGCGUGGaGCCGc -3'
miRNA:   3'- gaaCa--GCGCGUCGaGCGCGUCgUGGC- -5'
21529 3' -58.5 NC_004812.1 + 713 0.67 0.77706
Target:  5'- --cGUCgGCGuCGGCgccgGCGCGGuCGCCGg -3'
miRNA:   3'- gaaCAG-CGC-GUCGag--CGCGUC-GUGGC- -5'
21529 3' -58.5 NC_004812.1 + 1485 0.66 0.812663
Target:  5'- --cGgCGgGCGGCg-GCGgAGCGCCGg -3'
miRNA:   3'- gaaCaGCgCGUCGagCGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 1632 0.68 0.680469
Target:  5'- --cGUgCGCGCGGgUccCGCGCGGC-CCGc -3'
miRNA:   3'- gaaCA-GCGCGUCgA--GCGCGUCGuGGC- -5'
21529 3' -58.5 NC_004812.1 + 1650 0.67 0.758469
Target:  5'- -aUGaCGCGCcGCUCccccguugGcCGCGGCGCCGc -3'
miRNA:   3'- gaACaGCGCGuCGAG--------C-GCGUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 1952 0.67 0.72979
Target:  5'- aUUGcCGCGCg---CGCGCcgGGCGCCGg -3'
miRNA:   3'- gAACaGCGCGucgaGCGCG--UCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 2215 0.69 0.611019
Target:  5'- -gUGUCGcCGCGGCccgcggcccagcgcaCGCGCGGCGCgGc -3'
miRNA:   3'- gaACAGC-GCGUCGa--------------GCGCGUCGUGgC- -5'
21529 3' -58.5 NC_004812.1 + 2261 0.7 0.560005
Target:  5'- --gGUcCGCGuCGGCguccgCGCGCAGCACg- -3'
miRNA:   3'- gaaCA-GCGC-GUCGa----GCGCGUCGUGgc -5'
21529 3' -58.5 NC_004812.1 + 2326 0.73 0.402555
Target:  5'- --cG-CGCGCAGaaggCGCGCAGCGCgGg -3'
miRNA:   3'- gaaCaGCGCGUCga--GCGCGUCGUGgC- -5'
21529 3' -58.5 NC_004812.1 + 2369 0.73 0.419654
Target:  5'- --cGgcgCGCGCGGCgUCGCGgucCAGCGCCa -3'
miRNA:   3'- gaaCa--GCGCGUCG-AGCGC---GUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 2547 0.66 0.786171
Target:  5'- -----gGCGCGGCgguacUCGCGCGGCGgCa -3'
miRNA:   3'- gaacagCGCGUCG-----AGCGCGUCGUgGc -5'
21529 3' -58.5 NC_004812.1 + 2733 0.66 0.795147
Target:  5'- -----gGCGCGGCgcaggucgCGCGCGGCggGCCa -3'
miRNA:   3'- gaacagCGCGUCGa-------GCGCGUCG--UGGc -5'
21529 3' -58.5 NC_004812.1 + 2795 0.66 0.821185
Target:  5'- -gUGggCGUGCaggccaacGGCUCGUaCAGCACCa -3'
miRNA:   3'- gaACa-GCGCG--------UCGAGCGcGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 3130 0.69 0.650343
Target:  5'- --cGcCGgGCAGCggCGCGUagAGCACCa -3'
miRNA:   3'- gaaCaGCgCGUCGa-GCGCG--UCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 3208 0.69 0.660409
Target:  5'- -----gGCGCAGCgggcccgaggCGCGCGGCggGCCGa -3'
miRNA:   3'- gaacagCGCGUCGa---------GCGCGUCG--UGGC- -5'
21529 3' -58.5 NC_004812.1 + 3477 0.68 0.720055
Target:  5'- --gGUCGCGCcGUcaGCGCGGCggGCCGc -3'
miRNA:   3'- gaaCAGCGCGuCGagCGCGUCG--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.