miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 11967 0.66 0.979493
Target:  5'- uGCCGCaGACUCCccgGGACgcgaUGGCGCGc -3'
miRNA:   3'- -CGGUGgUUGAGGca-CUUG----ACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 147790 0.66 0.979493
Target:  5'- gGCUGCCGagGCUCuCG-GGGCUGGCG-AGg -3'
miRNA:   3'- -CGGUGGU--UGAG-GCaCUUGACUGCgUC- -5'
21529 5' -53.1 NC_004812.1 + 87741 0.66 0.968942
Target:  5'- gGgCGCCGGggCCGcGGACcGACGCGGg -3'
miRNA:   3'- -CgGUGGUUgaGGCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 137476 0.66 0.976905
Target:  5'- cGCCGCCuGCUUCGcgcgGGGCUccuggucaaccccGGCGCAc -3'
miRNA:   3'- -CGGUGGuUGAGGCa---CUUGA-------------CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 94091 0.66 0.971881
Target:  5'- uGCCGCCcGCUCgCGUGcgccCUGGCccugguGCGGg -3'
miRNA:   3'- -CGGUGGuUGAG-GCACuu--GACUG------CGUC- -5'
21529 5' -53.1 NC_004812.1 + 154375 0.66 0.974615
Target:  5'- cGCCGCCGcGCcgCgCGUGcGCUGGgcCGCGGg -3'
miRNA:   3'- -CGGUGGU-UGa-G-GCACuUGACU--GCGUC- -5'
21529 5' -53.1 NC_004812.1 + 25369 0.66 0.977149
Target:  5'- gGCuCGCCGGCgUCCGcgGGAUcgaacgcguacuUGGCGCGGc -3'
miRNA:   3'- -CG-GUGGUUG-AGGCa-CUUG------------ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 75728 0.66 0.974877
Target:  5'- cGCCAgCGGCUCCGUGuccacccggaacauCUcGGCGUAc -3'
miRNA:   3'- -CGGUgGUUGAGGCACuu------------GA-CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 151915 0.66 0.976409
Target:  5'- aGCCGCCcggGGCUCUggggcgcgccggagGUGGACgaGGCGCGc -3'
miRNA:   3'- -CGGUGG---UUGAGG--------------CACUUGa-CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 87102 0.66 0.968942
Target:  5'- cGUCGCC---UUCGUGGAUuacgUGACGCAGc -3'
miRNA:   3'- -CGGUGGuugAGGCACUUG----ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 122216 0.66 0.979493
Target:  5'- cGCCGCC----CCGgGGGCgGGCGCGGg -3'
miRNA:   3'- -CGGUGGuugaGGCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 94851 0.66 0.974615
Target:  5'- cGCCGCCGgacugACggagCUGUGucgggcGCUGACGCc- -3'
miRNA:   3'- -CGGUGGU-----UGa---GGCACu-----UGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 151971 0.66 0.971881
Target:  5'- gGCCGCCGGCgcgcccgcgcCCGUgugggcgcccGAGCUgggcGACGCGGc -3'
miRNA:   3'- -CGGUGGUUGa---------GGCA----------CUUGA----CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 11830 0.66 0.968942
Target:  5'- cCCACCAacGCUCCagccGCUGGCGCc- -3'
miRNA:   3'- cGGUGGU--UGAGGcacuUGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 25338 0.66 0.971881
Target:  5'- cGCCACCAGCcggCgGUGGGC-GGCGa-- -3'
miRNA:   3'- -CGGUGGUUGa--GgCACUUGaCUGCguc -5'
21529 5' -53.1 NC_004812.1 + 20386 0.66 0.968942
Target:  5'- gGCCAUgAGCagggCGUaGAGCUGGCGguGg -3'
miRNA:   3'- -CGGUGgUUGag--GCA-CUUGACUGCguC- -5'
21529 5' -53.1 NC_004812.1 + 153117 0.66 0.979493
Target:  5'- cGCCGCC----CCGgGGGCgGGCGCGGg -3'
miRNA:   3'- -CGGUGGuugaGGCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 135829 0.66 0.974615
Target:  5'- cGCCGCagguGCUCCaG-GAACgGaACGCAGa -3'
miRNA:   3'- -CGGUGgu--UGAGG-CaCUUGaC-UGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 121193 0.66 0.968942
Target:  5'- uCUGCCGACgaUCCGgcgGcAGCUGGCGCuGg -3'
miRNA:   3'- cGGUGGUUG--AGGCa--C-UUGACUGCGuC- -5'
21529 5' -53.1 NC_004812.1 + 151842 0.66 0.979493
Target:  5'- cGCCAgCGGCgagCCGUGGcCcGGCGCc- -3'
miRNA:   3'- -CGGUgGUUGa--GGCACUuGaCUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.