miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 42044 1.1 0.004954
Target:  5'- gGCCACCAACUCCGUGAACUGACGCAGc -3'
miRNA:   3'- -CGGUGGUUGAGGCACUUGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 57122 0.8 0.341517
Target:  5'- gGCCccgauGCCAugUCUGUGGGCgcgGGCGCAGg -3'
miRNA:   3'- -CGG-----UGGUugAGGCACUUGa--CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 15424 0.79 0.425417
Target:  5'- cGCCGCCccgggcCUCCGgGAGCUGGCGCGc -3'
miRNA:   3'- -CGGUGGuu----GAGGCaCUUGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 101466 0.77 0.510518
Target:  5'- uGCCagGCCAGCUCC-UGGccCUGGCGCAGg -3'
miRNA:   3'- -CGG--UGGUUGAGGcACUu-GACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 65809 0.77 0.510518
Target:  5'- cGCCGCCGAggCCGUGGACUGGCu--- -3'
miRNA:   3'- -CGGUGGUUgaGGCACUUGACUGcguc -5'
21529 5' -53.1 NC_004812.1 + 49981 0.76 0.560765
Target:  5'- -gCGgCGACUCCgGUGAGCUGGCGCuGg -3'
miRNA:   3'- cgGUgGUUGAGG-CACUUGACUGCGuC- -5'
21529 5' -53.1 NC_004812.1 + 133348 0.76 0.560765
Target:  5'- uCCAUCAGg-CCGUGGAcCUGGCGCAGg -3'
miRNA:   3'- cGGUGGUUgaGGCACUU-GACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 9376 0.76 0.570991
Target:  5'- gGCCAUgAACUUCGUGGccgcGCUGGCGCc- -3'
miRNA:   3'- -CGGUGgUUGAGGCACU----UGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 115163 0.76 0.581262
Target:  5'- cGgCACCGauagaGCUcCCGcGAGCUGACGCGGg -3'
miRNA:   3'- -CgGUGGU-----UGA-GGCaCUUGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 47100 0.74 0.664152
Target:  5'- gGCCcCCGGCUCCGUcgcGGCgaGACGCAGc -3'
miRNA:   3'- -CGGuGGUUGAGGCAc--UUGa-CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 140494 0.74 0.674483
Target:  5'- cGUCGCCAGgUCCGUGuucguCUcGCGCAGg -3'
miRNA:   3'- -CGGUGGUUgAGGCACuu---GAcUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 146849 0.73 0.705224
Target:  5'- gGCCGCCGGCgcgCCGcGGGCcugGugGCGGu -3'
miRNA:   3'- -CGGUGGUUGa--GGCaCUUGa--CugCGUC- -5'
21529 5' -53.1 NC_004812.1 + 98227 0.73 0.715356
Target:  5'- gGCCGCCugguCUCCGcgGGGC-GGCGCGGc -3'
miRNA:   3'- -CGGUGGuu--GAGGCa-CUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 91332 0.73 0.725416
Target:  5'- gGCCAgCAGCUuguaguagaCCGUGAGgUGGgGCAGa -3'
miRNA:   3'- -CGGUgGUUGA---------GGCACUUgACUgCGUC- -5'
21529 5' -53.1 NC_004812.1 + 26712 0.73 0.745277
Target:  5'- gGCCGCCGgccGCUUCGgcugGGGcCUGGCGCAc -3'
miRNA:   3'- -CGGUGGU---UGAGGCa---CUU-GACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 152220 0.73 0.745277
Target:  5'- gGCCGCCGgccGCUUCGgcugGGGcCUGGCGCAc -3'
miRNA:   3'- -CGGUGGU---UGAGGCa---CUU-GACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 49328 0.73 0.745277
Target:  5'- gGCCcgcuguaccgaGCCGACgcggCgGUcGAGCUGACGCAGc -3'
miRNA:   3'- -CGG-----------UGGUUGa---GgCA-CUUGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 106036 0.73 0.749202
Target:  5'- cGCCGCCAACggcgcgacgcaggggUCCGaggGAGaCUGGCGCGu -3'
miRNA:   3'- -CGGUGGUUG---------------AGGCa--CUU-GACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 67367 0.72 0.783697
Target:  5'- cGCCugCGACaCCGUG-GC-GGCGCGGg -3'
miRNA:   3'- -CGGugGUUGaGGCACuUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 136692 0.72 0.792975
Target:  5'- gGCCGCCGGCgCgGUGGcgGC-GGCGCGGg -3'
miRNA:   3'- -CGGUGGUUGaGgCACU--UGaCUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.