miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 19125 0.69 0.903515
Target:  5'- cCCGCCAGCUCggCGUGGGCggccagcGcCGCGGg -3'
miRNA:   3'- cGGUGGUUGAG--GCACUUGa------CuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 85122 0.7 0.876147
Target:  5'- aCCGCCAACUaCCG-GGGC--GCGCGGg -3'
miRNA:   3'- cGGUGGUUGA-GGCaCUUGacUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 105884 0.7 0.876147
Target:  5'- cGCCGCagaAGCUcucCCGUGGGCgaacggcGGCGCGGc -3'
miRNA:   3'- -CGGUGg--UUGA---GGCACUUGa------CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 67681 0.7 0.883337
Target:  5'- cGCCACCGGCggCCaGgguuccGAGCagGGCGCGGg -3'
miRNA:   3'- -CGGUGGUUGa-GG-Ca-----CUUGa-CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 133051 0.7 0.883337
Target:  5'- cCCGCCcACUCgG-GGGCgGGCGCGGg -3'
miRNA:   3'- cGGUGGuUGAGgCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 23036 0.69 0.890298
Target:  5'- cGCCGCCGGCaggacgCCGccGAGCUcGACGCc- -3'
miRNA:   3'- -CGGUGGUUGa-----GGCa-CUUGA-CUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 138360 0.69 0.897025
Target:  5'- uCCGCCggUUCCGcgGGACgGGCGgGGg -3'
miRNA:   3'- cGGUGGuuGAGGCa-CUUGaCUGCgUC- -5'
21529 5' -53.1 NC_004812.1 + 78547 0.69 0.897025
Target:  5'- uGCCGCaagggGGCUCCGgGGGCUGGCGa-- -3'
miRNA:   3'- -CGGUGg----UUGAGGCaCUUGACUGCguc -5'
21529 5' -53.1 NC_004812.1 + 92582 0.69 0.897025
Target:  5'- uGCCGCCuggcGCUCCGgggccccGAGCUGAC-CGa -3'
miRNA:   3'- -CGGUGGu---UGAGGCa------CUUGACUGcGUc -5'
21529 5' -53.1 NC_004812.1 + 55518 0.7 0.868733
Target:  5'- cGCCGgCAGCaccucgCCGUGGacGCUGAccCGCAGc -3'
miRNA:   3'- -CGGUgGUUGa-----GGCACU--UGACU--GCGUC- -5'
21529 5' -53.1 NC_004812.1 + 96351 0.7 0.853253
Target:  5'- cGCCACCGGCgccCCGacgGuGCUGcCGCGGc -3'
miRNA:   3'- -CGGUGGUUGa--GGCa--CuUGACuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 82281 0.7 0.853253
Target:  5'- gGCuCGCCAgguGCUCCGUcggcgucaccGGGCccaUGACGCGGg -3'
miRNA:   3'- -CG-GUGGU---UGAGGCA----------CUUG---ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 15424 0.79 0.425417
Target:  5'- cGCCGCCccgggcCUCCGgGAGCUGGCGCGc -3'
miRNA:   3'- -CGGUGGuu----GAGGCaCUUGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 101466 0.77 0.510518
Target:  5'- uGCCagGCCAGCUCC-UGGccCUGGCGCAGg -3'
miRNA:   3'- -CGG--UGGUUGAGGcACUu-GACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 49981 0.76 0.560765
Target:  5'- -gCGgCGACUCCgGUGAGCUGGCGCuGg -3'
miRNA:   3'- cgGUgGUUGAGG-CACUUGACUGCGuC- -5'
21529 5' -53.1 NC_004812.1 + 115163 0.76 0.581262
Target:  5'- cGgCACCGauagaGCUcCCGcGAGCUGACGCGGg -3'
miRNA:   3'- -CgGUGGU-----UGA-GGCaCUUGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 49328 0.73 0.745277
Target:  5'- gGCCcgcuguaccgaGCCGACgcggCgGUcGAGCUGACGCAGc -3'
miRNA:   3'- -CGG-----------UGGUUGa---GgCA-CUUGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 152220 0.73 0.745277
Target:  5'- gGCCGCCGgccGCUUCGgcugGGGcCUGGCGCAc -3'
miRNA:   3'- -CGGUGGU---UGAGGCa---CUU-GACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 106036 0.73 0.749202
Target:  5'- cGCCGCCAACggcgcgacgcaggggUCCGaggGAGaCUGGCGCGu -3'
miRNA:   3'- -CGGUGGUUG---------------AGGCa--CUU-GACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 67367 0.72 0.783697
Target:  5'- cGCCugCGACaCCGUG-GC-GGCGCGGg -3'
miRNA:   3'- -CGGugGUUGaGGCACuUGaCUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.