miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 1415 0.68 0.942116
Target:  5'- cGCCGCCA--UCgCG-GAuuauGCUGAUGCGGg -3'
miRNA:   3'- -CGGUGGUugAG-GCaCU----UGACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 2773 0.68 0.942116
Target:  5'- cGCCGCCGugUCCuaucucaucGUGGGCg--UGCAGg -3'
miRNA:   3'- -CGGUGGUugAGG---------CACUUGacuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 3000 0.68 0.927046
Target:  5'- cGUCACCGACagCGaGGACagcgacgaUGACGCGGa -3'
miRNA:   3'- -CGGUGGUUGagGCaCUUG--------ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 5409 0.67 0.958826
Target:  5'- cGUCGCCGGCcCCGcGGAC-GACgGCGGg -3'
miRNA:   3'- -CGGUGGUUGaGGCaCUUGaCUG-CGUC- -5'
21529 5' -53.1 NC_004812.1 + 7543 0.7 0.883337
Target:  5'- cCCGCCcACUCgG-GGGCgGGCGCGGg -3'
miRNA:   3'- cGGUGGuUGAGgCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 9376 0.76 0.570991
Target:  5'- gGCCAUgAACUUCGUGGccgcGCUGGCGCc- -3'
miRNA:   3'- -CGGUGgUUGAGGCACU----UGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 10873 0.69 0.91577
Target:  5'- aGCCccCCGAC-CCGcGGGCgcugGACGCGGa -3'
miRNA:   3'- -CGGu-GGUUGaGGCaCUUGa---CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 11830 0.66 0.968942
Target:  5'- cCCACCAacGCUCCagccGCUGGCGCc- -3'
miRNA:   3'- cGGUGGU--UGAGGcacuUGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 11967 0.66 0.979493
Target:  5'- uGCCGCaGACUCCccgGGACgcgaUGGCGCGc -3'
miRNA:   3'- -CGGUGgUUGAGGca-CUUG----ACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 12045 0.67 0.96172
Target:  5'- cGCaCGCCGACgacgucgcggugCCGUGGagACUGuACGCGa -3'
miRNA:   3'- -CG-GUGGUUGa-----------GGCACU--UGAC-UGCGUc -5'
21529 5' -53.1 NC_004812.1 + 12226 0.71 0.828505
Target:  5'- cGCCGCCAGCagcaCG-GGcucGCUGACGCAc -3'
miRNA:   3'- -CGGUGGUUGag--GCaCU---UGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 12572 0.68 0.937338
Target:  5'- cGCCGCCGcaccucCUCCGcGAACgcguacacccgGGCGUAGg -3'
miRNA:   3'- -CGGUGGUu-----GAGGCaCUUGa----------CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 14441 0.66 0.974615
Target:  5'- aGCgCGCCAACgauggcgcCCGUGuGGCcggagGGCGCGGg -3'
miRNA:   3'- -CG-GUGGUUGa-------GGCAC-UUGa----CUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 15424 0.79 0.425417
Target:  5'- cGCCGCCccgggcCUCCGgGAGCUGGCGCGc -3'
miRNA:   3'- -CGGUGGuu----GAGGCaCUUGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 18710 0.66 0.977149
Target:  5'- aGCCGCagUAGCUCCGcgGcGCUGGgGCGc -3'
miRNA:   3'- -CGGUG--GUUGAGGCa-CuUGACUgCGUc -5'
21529 5' -53.1 NC_004812.1 + 19125 0.69 0.903515
Target:  5'- cCCGCCAGCUCggCGUGGGCggccagcGcCGCGGg -3'
miRNA:   3'- cGGUGGUUGAG--GCACUUGa------CuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 19833 0.69 0.890298
Target:  5'- gGCCAgCAGCUCC-UGGAuCUGACagagGCGGu -3'
miRNA:   3'- -CGGUgGUUGAGGcACUU-GACUG----CGUC- -5'
21529 5' -53.1 NC_004812.1 + 20177 0.67 0.955003
Target:  5'- gGCC-CCGAC-CCGggcGAGCgGGCGCGu -3'
miRNA:   3'- -CGGuGGUUGaGGCa--CUUGaCUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 20386 0.66 0.968942
Target:  5'- gGCCAUgAGCagggCGUaGAGCUGGCGguGg -3'
miRNA:   3'- -CGGUGgUUGag--GCA-CUUGACUGCguC- -5'
21529 5' -53.1 NC_004812.1 + 21038 0.67 0.964469
Target:  5'- gGCCGCgCAugagcgcgacgauCUCCGccGGGCUGACGuCGGg -3'
miRNA:   3'- -CGGUG-GUu------------GAGGCa-CUUGACUGC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.