miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 47149 0.65 0.877021
Target:  5'- ---cGCUGCAGGGCCGCUcgauuuuccaggccGCgCGGg- -3'
miRNA:   3'- agauCGGCGUCUUGGCGA--------------UGgGCCac -5'
21545 3' -57.3 NC_004812.1 + 100169 0.66 0.857052
Target:  5'- aUCgcGCCGcCAGGcccGCCGCccgccGCCCGGa- -3'
miRNA:   3'- -AGauCGGC-GUCU---UGGCGa----UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 53892 0.66 0.852412
Target:  5'- -gUAGCCGUAGAACgGCgAcauguacacaaagucCCCGGUc -3'
miRNA:   3'- agAUCGGCGUCUUGgCGaU---------------GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 32071 0.66 0.87199
Target:  5'- ---cGUCGCGGGGcCCGUgggGCCCGGc- -3'
miRNA:   3'- agauCGGCGUCUU-GGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 152733 0.66 0.860105
Target:  5'- cUCUGGCUGCGcGAGCUGCgccgcacgcgcgacGCgCUGGUGc -3'
miRNA:   3'- -AGAUCGGCGU-CUUGGCGa-------------UG-GGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 88999 0.66 0.857052
Target:  5'- cCUGGCCGCGGAccacCCGCU--UCGGc- -3'
miRNA:   3'- aGAUCGGCGUCUu---GGCGAugGGCCac -5'
21545 3' -57.3 NC_004812.1 + 154405 0.66 0.864624
Target:  5'- --gGGCCGCGGcGACaCGCUGCUCGc-- -3'
miRNA:   3'- agaUCGGCGUC-UUG-GCGAUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 98436 0.66 0.841312
Target:  5'- --cGGCCGCGGGGCgGCagGCgCGGg- -3'
miRNA:   3'- agaUCGGCGUCUUGgCGa-UGgGCCac -5'
21545 3' -57.3 NC_004812.1 + 98931 0.66 0.857052
Target:  5'- cCUGG-CGCucGACCGCgGCCCGGa- -3'
miRNA:   3'- aGAUCgGCGucUUGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 23815 0.66 0.857052
Target:  5'- ---cGCCGCgcGGGGCgGCgACCCGGg- -3'
miRNA:   3'- agauCGGCG--UCUUGgCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 79012 0.66 0.87199
Target:  5'- gCUGGCCGgGGAcgcCCGCgacCgCCGGUa -3'
miRNA:   3'- aGAUCGGCgUCUu--GGCGau-G-GGCCAc -5'
21545 3' -57.3 NC_004812.1 + 141938 0.66 0.864624
Target:  5'- --aGGCCGCGGggUgGCacgGCCCGa-- -3'
miRNA:   3'- agaUCGGCGUCuuGgCGa--UGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 126934 0.66 0.849279
Target:  5'- --cGGCCGCGGGgaggggccgggGCCGCgagGgCCGGg- -3'
miRNA:   3'- agaUCGGCGUCU-----------UGGCGa--UgGGCCac -5'
21545 3' -57.3 NC_004812.1 + 37727 0.66 0.841312
Target:  5'- cCUGGCCGCcGAGCU-CUGgcCCCGGg- -3'
miRNA:   3'- aGAUCGGCGuCUUGGcGAU--GGGCCac -5'
21545 3' -57.3 NC_004812.1 + 64726 0.66 0.841312
Target:  5'- --aGGCCGCGGgcAugCGCgccCCCGGg- -3'
miRNA:   3'- agaUCGGCGUC--UugGCGau-GGGCCac -5'
21545 3' -57.3 NC_004812.1 + 68319 0.66 0.87199
Target:  5'- gCUcGCCGCAGAGCgccuCGUUaagagccaggagGCCCGGg- -3'
miRNA:   3'- aGAuCGGCGUCUUG----GCGA------------UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 96451 0.66 0.857052
Target:  5'- --gAGCUGCAGuGGCUGCUgggggccgACCCGGc- -3'
miRNA:   3'- agaUCGGCGUC-UUGGCGA--------UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 126527 0.66 0.864624
Target:  5'- --gGGCCGCGcccCCGCgaggGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUcuuGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 29210 0.66 0.87199
Target:  5'- uUCUcGCCGCGG---UGCUGCUCGGg- -3'
miRNA:   3'- -AGAuCGGCGUCuugGCGAUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 54658 0.66 0.841312
Target:  5'- gUCgccGCCGCGGGGCCcaGCgGCCgGGUc -3'
miRNA:   3'- -AGau-CGGCGUCUUGG--CGaUGGgCCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.