miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 573 0.71 0.572605
Target:  5'- --cGGCCGCguGGAGCCGCgggcgcgGCuCCGGUa -3'
miRNA:   3'- agaUCGGCG--UCUUGGCGa------UG-GGCCAc -5'
21545 3' -57.3 NC_004812.1 + 1018 0.66 0.864624
Target:  5'- --gGGCCGCGcccCCGCgaggGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUcuuGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 1066 0.66 0.841312
Target:  5'- --cGGCCGCGGucuCCucCUGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUCuu-GGc-GAUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 1426 0.66 0.849279
Target:  5'- --cGGCCGCGGGgaggggccgggGCCGCgagGgCCGGg- -3'
miRNA:   3'- agaUCGGCGUCU-----------UGGCGa--UgGGCCac -5'
21545 3' -57.3 NC_004812.1 + 1668 0.73 0.456877
Target:  5'- gUUGGCCGCGGcGCCGCgGCCCGc-- -3'
miRNA:   3'- aGAUCGGCGUCuUGGCGaUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 3497 0.68 0.771487
Target:  5'- --gGGCCGCGGG--CGCggGCCCGGg- -3'
miRNA:   3'- agaUCGGCGUCUugGCGa-UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 4731 0.71 0.612969
Target:  5'- ---cGCCGUAGAGCaCGCgcCCCGGg- -3'
miRNA:   3'- agauCGGCGUCUUG-GCGauGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 5801 0.67 0.833159
Target:  5'- cUCgGGCUGCGGGGCUGCgggGCgCGGc- -3'
miRNA:   3'- -AGaUCGGCGUCUUGGCGa--UGgGCCac -5'
21545 3' -57.3 NC_004812.1 + 8601 0.67 0.798823
Target:  5'- ---cGCCGCccGGAgGCCGCgccuCCCGGUa -3'
miRNA:   3'- agauCGGCG--UCU-UGGCGau--GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 8989 0.67 0.789848
Target:  5'- aCUGGCgCGCAGAggcGCCaaGCUGaggcCCCGGg- -3'
miRNA:   3'- aGAUCG-GCGUCU---UGG--CGAU----GGGCCac -5'
21545 3' -57.3 NC_004812.1 + 12825 0.67 0.833159
Target:  5'- --cGGCCGCGGuggucucuGGCUGCU-CCaCGGUGu -3'
miRNA:   3'- agaUCGGCGUC--------UUGGCGAuGG-GCCAC- -5'
21545 3' -57.3 NC_004812.1 + 13037 0.68 0.73337
Target:  5'- --gGGUCGCGGGGCCGgc-CCCGGUc -3'
miRNA:   3'- agaUCGGCGUCUUGGCgauGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 14445 0.67 0.833159
Target:  5'- uUCUGcGCCGC-GAuCCGCgucgcCCCGGUc -3'
miRNA:   3'- -AGAU-CGGCGuCUuGGCGau---GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 15226 0.69 0.713756
Target:  5'- cCUGGCCgacugcuucgcGCAGGGCgGacccggcgGCCCGGUGg -3'
miRNA:   3'- aGAUCGG-----------CGUCUUGgCga------UGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 16354 1.09 0.002015
Target:  5'- aUCUAGCCGCAGAACCGCUACCCGGUGg -3'
miRNA:   3'- -AGAUCGGCGUCUUGGCGAUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 16596 0.69 0.67378
Target:  5'- --gGGCgGCAGGGCCGCaGCaccauaaCGGUGa -3'
miRNA:   3'- agaUCGgCGUCUUGGCGaUGg------GCCAC- -5'
21545 3' -57.3 NC_004812.1 + 16860 0.7 0.66368
Target:  5'- --cGGUCGCGGGggACCGCgACCUGGUc -3'
miRNA:   3'- agaUCGGCGUCU--UGGCGaUGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 17893 0.66 0.857052
Target:  5'- ---cGCCGCGGGcccGCCGCgcCCgCGGUc -3'
miRNA:   3'- agauCGGCGUCU---UGGCGauGG-GCCAc -5'
21545 3' -57.3 NC_004812.1 + 18295 0.68 0.743051
Target:  5'- --aGGCCGCggcgggaguAGGACCGCgacagguUCCGGUGc -3'
miRNA:   3'- agaUCGGCG---------UCUUGGCGau-----GGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 18833 0.7 0.653555
Target:  5'- --gGGCgGCGGuuGCgCGCcGCCCGGUGg -3'
miRNA:   3'- agaUCGgCGUCu-UG-GCGaUGGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.