miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 15226 0.69 0.713756
Target:  5'- cCUGGCCgacugcuucgcGCAGGGCgGacccggcgGCCCGGUGg -3'
miRNA:   3'- aGAUCGG-----------CGUCUUGgCga------UGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 130239 0.71 0.612969
Target:  5'- ---cGCCGUAGAGCaCGCgcCCCGGg- -3'
miRNA:   3'- agauCGGCGUCUUG-GCGauGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 142206 0.7 0.622099
Target:  5'- gCUGGCCGCcGGcgucgucgugcugGCCGUaUACCUGGUGc -3'
miRNA:   3'- aGAUCGGCGuCU-------------UGGCG-AUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 94762 0.7 0.643414
Target:  5'- gCUGGCCGCcGAGuucgcCCGCguccACCCGGa- -3'
miRNA:   3'- aGAUCGGCGuCUU-----GGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 101432 0.7 0.653555
Target:  5'- gUCggugAGCuCGCGGAGCgCGUc-CCCGGUGa -3'
miRNA:   3'- -AGa---UCG-GCGUCUUG-GCGauGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 16860 0.7 0.66368
Target:  5'- --cGGUCGCGGGggACCGCgACCUGGUc -3'
miRNA:   3'- agaUCGGCGUCU--UGGCGaUGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 134998 0.69 0.683845
Target:  5'- ---cGCCGCcGGGCCGaCUcGCCCGGUc -3'
miRNA:   3'- agauCGGCGuCUUGGC-GA-UGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 154876 0.69 0.69387
Target:  5'- cUCgGGCCGCGGAGgCGCgcggGgCCGGg- -3'
miRNA:   3'- -AGaUCGGCGUCUUgGCGa---UgGGCCac -5'
21545 3' -57.3 NC_004812.1 + 98401 0.69 0.703843
Target:  5'- --cGGCCGCGGGgcggcGCCGCagcguCUCGGUGc -3'
miRNA:   3'- agaUCGGCGUCU-----UGGCGau---GGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 48883 0.71 0.592731
Target:  5'- --cGGCCGCGGGcgGCCGCUACagcgCGGg- -3'
miRNA:   3'- agaUCGGCGUCU--UGGCGAUGg---GCCac -5'
21545 3' -57.3 NC_004812.1 + 156387 0.71 0.581644
Target:  5'- --gGGCCGCGGGggccgggGCUGCgcgACCCGGg- -3'
miRNA:   3'- agaUCGGCGUCU-------UGGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 573 0.71 0.572605
Target:  5'- --cGGCCGCguGGAGCCGCgggcgcgGCuCCGGUa -3'
miRNA:   3'- agaUCGGCG--UCUUGGCGa------UG-GGCCAc -5'
21545 3' -57.3 NC_004812.1 + 29832 0.78 0.257603
Target:  5'- --gAGCgCGCAGAGgCGCcACCCGGUGg -3'
miRNA:   3'- agaUCG-GCGUCUUgGCGaUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 140219 0.75 0.378845
Target:  5'- ---cGaCCGCAGAACCGCUACCCa--- -3'
miRNA:   3'- agauC-GGCGUCUUGGCGAUGGGccac -5'
21545 3' -57.3 NC_004812.1 + 1668 0.73 0.456877
Target:  5'- gUUGGCCGCGGcGCCGCgGCCCGc-- -3'
miRNA:   3'- aGAUCGGCGUCuUGGCGaUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 94266 0.73 0.456877
Target:  5'- aCgcGCCGCGGGcgcgcGCCGCgGCCCGGg- -3'
miRNA:   3'- aGauCGGCGUCU-----UGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 138896 0.73 0.456877
Target:  5'- ---cGCCGCAGAGCCuGCUGgUCGGUc -3'
miRNA:   3'- agauCGGCGUCUUGG-CGAUgGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 48368 0.72 0.513411
Target:  5'- ---cGCCGCGGAcgccGCCGCcggGCCCGGc- -3'
miRNA:   3'- agauCGGCGUCU----UGGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 19436 0.72 0.523121
Target:  5'- --cGGCCGCAGGACCGCcuCCCGc-- -3'
miRNA:   3'- agaUCGGCGUCUUGGCGauGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 50876 0.72 0.542742
Target:  5'- gCUGGUCGCGGGccACCcCccgGCCCGGUGu -3'
miRNA:   3'- aGAUCGGCGUCU--UGGcGa--UGGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.