miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 16354 1.09 0.002015
Target:  5'- aUCUAGCCGCAGAACCGCUACCCGGUGg -3'
miRNA:   3'- -AGAUCGGCGUCUUGGCGAUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 41936 0.81 0.165783
Target:  5'- --cGGCCGCcccuGGACCGCgACCCGGUGg -3'
miRNA:   3'- agaUCGGCGu---CUUGGCGaUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 29832 0.78 0.257603
Target:  5'- --gAGCgCGCAGAGgCGCcACCCGGUGg -3'
miRNA:   3'- agaUCG-GCGUCUUgGCGaUGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 140219 0.75 0.378845
Target:  5'- ---cGaCCGCAGAACCGCUACCCa--- -3'
miRNA:   3'- agauC-GGCGUCUUGGCGAUGGGccac -5'
21545 3' -57.3 NC_004812.1 + 108953 0.75 0.387066
Target:  5'- gUCgggGGCgCGgGGGAUCGCgggACCCGGUGg -3'
miRNA:   3'- -AGa--UCG-GCgUCUUGGCGa--UGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 113238 0.74 0.403856
Target:  5'- gCUGGCCGguGGGCCGCU-CgCGGg- -3'
miRNA:   3'- aGAUCGGCguCUUGGCGAuGgGCCac -5'
21545 3' -57.3 NC_004812.1 + 96987 0.74 0.412422
Target:  5'- --cGGCUGCGGGGCCGCcaccCCCGGUu -3'
miRNA:   3'- agaUCGGCGUCUUGGCGau--GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 126285 0.74 0.43878
Target:  5'- uUCgAGCuCGCGGGGCCGUU-CCUGGUGc -3'
miRNA:   3'- -AGaUCG-GCGUCUUGGCGAuGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 94266 0.73 0.456877
Target:  5'- aCgcGCCGCGGGcgcgcGCCGCgGCCCGGg- -3'
miRNA:   3'- aGauCGGCGUCU-----UGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 32569 0.73 0.456877
Target:  5'- gUUGGCCGCGGcGCCGCgGCCCGc-- -3'
miRNA:   3'- aGAUCGGCGUCuUGGCGaUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 1668 0.73 0.456877
Target:  5'- gUUGGCCGCGGcGCCGCgGCCCGc-- -3'
miRNA:   3'- aGAUCGGCGUCuUGGCGaUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 138896 0.73 0.456877
Target:  5'- ---cGCCGCAGAGCCuGCUGgUCGGUc -3'
miRNA:   3'- agauCGGCGUCUUGG-CGAUgGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 88195 0.73 0.456877
Target:  5'- cUCUcGGCCGCGGGgcgaGCCGCggcCCCGGa- -3'
miRNA:   3'- -AGA-UCGGCGUCU----UGGCGau-GGGCCac -5'
21545 3' -57.3 NC_004812.1 + 84405 0.73 0.456877
Target:  5'- --aGGCCGCGGAcgccCCGCgacgACCCGGg- -3'
miRNA:   3'- agaUCGGCGUCUu---GGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 146848 0.73 0.484751
Target:  5'- --cGGCCGCcGGcgcGCCGCggGCCUGGUGg -3'
miRNA:   3'- agaUCGGCGuCU---UGGCGa-UGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 48368 0.72 0.513411
Target:  5'- ---cGCCGCGGAcgccGCCGCcggGCCCGGc- -3'
miRNA:   3'- agauCGGCGUCU----UGGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 19436 0.72 0.523121
Target:  5'- --cGGCCGCAGGACCGCcuCCCGc-- -3'
miRNA:   3'- agaUCGGCGUCUUGGCGauGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 50876 0.72 0.542742
Target:  5'- gCUGGUCGCGGGccACCcCccgGCCCGGUGu -3'
miRNA:   3'- aGAUCGGCGUCU--UGGcGa--UGGGCCAC- -5'
21545 3' -57.3 NC_004812.1 + 124761 0.72 0.552645
Target:  5'- gCUGGCUGUGGAGCCGgcGCUCGGUc -3'
miRNA:   3'- aGAUCGGCGUCUUGGCgaUGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 573 0.71 0.572605
Target:  5'- --cGGCCGCguGGAGCCGCgggcgcgGCuCCGGUa -3'
miRNA:   3'- agaUCGGCG--UCUUGGCGa------UG-GGCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.