miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 102766 0.66 0.928693
Target:  5'- -gCGGCGUCgucga-GCCCc-CCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 65461 0.66 0.938779
Target:  5'- -cCGGCcCCcgGAccGCCCGUCCC-Cg -3'
miRNA:   3'- caGCCGcGGaaUUuaCGGGUAGGGcG- -5'
21547 5' -54.9 NC_004812.1 + 130567 0.66 0.935855
Target:  5'- --gGGCGCCgcgcccccgGCCCcggcCCCGCc -3'
miRNA:   3'- cagCCGCGGaauuua---CGGGua--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 6191 0.66 0.938779
Target:  5'- -gCGGagGCCcgGGGcGCCCGgcggCCCGCg -3'
miRNA:   3'- caGCCg-CGGaaUUUaCGGGUa---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 92305 0.66 0.933858
Target:  5'- cGUCGGCcCCgguc--GCCCcgccgCCCGCu -3'
miRNA:   3'- -CAGCCGcGGaauuuaCGGGua---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 58314 0.66 0.933858
Target:  5'- cGUCGuccacGCGCCgg-GGUGCUCGUCgaUCGCg -3'
miRNA:   3'- -CAGC-----CGCGGaauUUACGGGUAG--GGCG- -5'
21547 5' -54.9 NC_004812.1 + 10285 0.66 0.933858
Target:  5'- uUCGGCGCg--GAGaGCCCGccUCCCa- -3'
miRNA:   3'- cAGCCGCGgaaUUUaCGGGU--AGGGcg -5'
21547 5' -54.9 NC_004812.1 + 95795 0.66 0.928693
Target:  5'- -gCGGUGCUggugaagUGAccGCCCcgCCCGa -3'
miRNA:   3'- caGCCGCGGa------AUUuaCGGGuaGGGCg -5'
21547 5' -54.9 NC_004812.1 + 97330 0.66 0.923286
Target:  5'- --gGGUGCCgcgc--GCCCGcgacccugaUCCCGCg -3'
miRNA:   3'- cagCCGCGGaauuuaCGGGU---------AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 154603 0.66 0.928693
Target:  5'- cGUCGGCGCCccgagcGAccGCCgGcgggaCCCGCc -3'
miRNA:   3'- -CAGCCGCGGaa----UUuaCGGgUa----GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 67493 0.66 0.933858
Target:  5'- -cUGGCGCCcgcgg-GCCguCGUCUCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGG--GUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 71944 0.66 0.923286
Target:  5'- -aCGGCGCgg-GGcgGCCC-UgCCGCg -3'
miRNA:   3'- caGCCGCGgaaUUuaCGGGuAgGGCG- -5'
21547 5' -54.9 NC_004812.1 + 129051 0.66 0.933858
Target:  5'- -gCGGCGCCgggccgGCUCuUCuuGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuAGggCG- -5'
21547 5' -54.9 NC_004812.1 + 77628 0.66 0.925478
Target:  5'- cUUGGCGCUgUAAAccGCCCcccgguggaaguacUCCCGCg -3'
miRNA:   3'- cAGCCGCGGaAUUUa-CGGGu-------------AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 719 0.66 0.923286
Target:  5'- cGUCGGCGCCg-----GCgCGgucgCCgGCg -3'
miRNA:   3'- -CAGCCGCGGaauuuaCGgGUa---GGgCG- -5'
21547 5' -54.9 NC_004812.1 + 10394 0.66 0.938779
Target:  5'- --gGGCGCCc---AUGCCCAgaaCGCg -3'
miRNA:   3'- cagCCGCGGaauuUACGGGUaggGCG- -5'
21547 5' -54.9 NC_004812.1 + 117395 0.66 0.928693
Target:  5'- -gCGGCGCCg-----GCCCGcUgCUGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGU-AgGGCG- -5'
21547 5' -54.9 NC_004812.1 + 143125 0.66 0.923286
Target:  5'- -cUGGCGCUgacgGAcGUGUUCGUCcCCGCg -3'
miRNA:   3'- caGCCGCGGaa--UU-UACGGGUAG-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 32264 0.66 0.943458
Target:  5'- -cCGGCuaugcaaacGCCgugcgcGAcgGCCCGcCCCGCg -3'
miRNA:   3'- caGCCG---------CGGaa----UUuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 114681 0.66 0.928693
Target:  5'- -cCGGUGCCgggcgcGCCCGgggCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUag-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.