miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 12639 1.12 0.002234
Target:  5'- gGUCGGCGCCUUAAAUGCCCAUCCCGCg -3'
miRNA:   3'- -CAGCCGCGGAAUUUACGGGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 86234 0.85 0.129406
Target:  5'- uUCGGCGCCUUG---GCCCuAUCCCGCc -3'
miRNA:   3'- cAGCCGCGGAAUuuaCGGG-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 153514 0.78 0.346832
Target:  5'- -gCGGCGCCUcccccGCCCcgCCCGCc -3'
miRNA:   3'- caGCCGCGGAauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 28005 0.78 0.346832
Target:  5'- -gCGGCGCCUcccccGCCCcgCCCGCc -3'
miRNA:   3'- caGCCGCGGAauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 41253 0.77 0.370823
Target:  5'- uGUCGGCGCCgc--GU-CCCcgCCCGCg -3'
miRNA:   3'- -CAGCCGCGGaauuUAcGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 11174 0.77 0.3824
Target:  5'- gGUCGGUGCCaucaggucgcgccuuUUAAcgGCCCGccacgCCCGCg -3'
miRNA:   3'- -CAGCCGCGG---------------AAUUuaCGGGUa----GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1675 0.77 0.387434
Target:  5'- -gCGGCGCCgcg---GCCCG-CCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 32576 0.77 0.387434
Target:  5'- -gCGGCGCCgcg---GCCCG-CCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 2920 0.77 0.404528
Target:  5'- -aCGGCGCCggcGAagGCCagGUCCCGCg -3'
miRNA:   3'- caGCCGCGGaa-UUuaCGGg-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 128428 0.77 0.404528
Target:  5'- -aCGGCGCCggcGAagGCCagGUCCCGCg -3'
miRNA:   3'- caGCCGCGGaa-UUuaCGGg-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 18553 0.77 0.413251
Target:  5'- -gCGGCGCgUUGccgggagccguGGUGCCCG-CCCGCg -3'
miRNA:   3'- caGCCGCGgAAU-----------UUACGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 52096 0.76 0.440102
Target:  5'- --gGGCGCgCgacGAccGCCCGUCCCGCg -3'
miRNA:   3'- cagCCGCG-Gaa-UUuaCGGGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 26933 0.76 0.458544
Target:  5'- -aCGGCGCCgcgg--GCUCAUCgCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUAG-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 7600 0.75 0.47739
Target:  5'- -cCGGCGCCgccgc-GCCCggCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 133108 0.75 0.47739
Target:  5'- -cCGGCGCCgccgc-GCCCggCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 71696 0.75 0.486956
Target:  5'- -gUGGCGCa---GAUGCCCGcCCCGCa -3'
miRNA:   3'- caGCCGCGgaauUUACGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 84710 0.75 0.486956
Target:  5'- -gCGGCGCCgcgcc-GCCCggCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 14664 0.75 0.516174
Target:  5'- -aCGGCGCCUUcgggccGUGCCac-CCCGCg -3'
miRNA:   3'- caGCCGCGGAAuu----UACGGguaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 151793 0.74 0.526071
Target:  5'- gGUCGGgGCCgc--GUGCCgAcCCCGCg -3'
miRNA:   3'- -CAGCCgCGGaauuUACGGgUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 120892 0.74 0.526071
Target:  5'- gGUCGGgGCCgc--GUGCCgAcCCCGCg -3'
miRNA:   3'- -CAGCCgCGGaauuUACGGgUaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.