miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 55679 0.72 0.683519
Target:  5'- cGUCGGC-CCagcucuccgGCCCGUCCuCGCg -3'
miRNA:   3'- -CAGCCGcGGaauuua---CGGGUAGG-GCG- -5'
21547 5' -54.9 NC_004812.1 + 127245 0.73 0.576504
Target:  5'- -cCGcGCGCCUccGcgGCCCGagCCCGCg -3'
miRNA:   3'- caGC-CGCGGAauUuaCGGGUa-GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 4685 0.73 0.586737
Target:  5'- -cCGGCGCCgagggGAGcGCCCccggCCCGCc -3'
miRNA:   3'- caGCCGCGGaa---UUUaCGGGua--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 28807 0.73 0.62793
Target:  5'- -gCGGCGCCUgcuguuuAAUaGCCUgGUCCCGCc -3'
miRNA:   3'- caGCCGCGGAau-----UUA-CGGG-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 18814 0.72 0.658886
Target:  5'- -gCGGCGCCcucgccGCCCGccagaUCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGU-----AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 25874 0.72 0.658886
Target:  5'- gGUUGGCGgCggccg-GCCC-UCCCGCg -3'
miRNA:   3'- -CAGCCGCgGaauuuaCGGGuAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 146017 0.72 0.658886
Target:  5'- cGUCGGCGCUccgcggcgcaUAAAUGCCCccggCaCCGCu -3'
miRNA:   3'- -CAGCCGCGGa---------AUUUACGGGua--G-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 94594 0.72 0.669172
Target:  5'- --aGGcCGCCUcgccGcgGCCUGUCCCGCg -3'
miRNA:   3'- cagCC-GCGGAau--UuaCGGGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 18847 0.72 0.669172
Target:  5'- cGUCGcGCGCCUcg---GCCCAgcgggUCCCGg -3'
miRNA:   3'- -CAGC-CGCGGAauuuaCGGGU-----AGGGCg -5'
21547 5' -54.9 NC_004812.1 + 119978 0.73 0.576504
Target:  5'- -gCGGCGCCcggc--GCCCuccUCCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGu--AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 49815 0.73 0.576504
Target:  5'- aGUCGGCGCgag----GCCCccUCCCGCg -3'
miRNA:   3'- -CAGCCGCGgaauuuaCGGGu-AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 66315 0.74 0.566311
Target:  5'- -gCGGCGCCcaggc-GCCCGUcgCCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUA--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 153514 0.78 0.346832
Target:  5'- -gCGGCGCCUcccccGCCCcgCCCGCc -3'
miRNA:   3'- caGCCGCGGAauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1675 0.77 0.387434
Target:  5'- -gCGGCGCCgcg---GCCCG-CCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 128428 0.77 0.404528
Target:  5'- -aCGGCGCCggcGAagGCCagGUCCCGCg -3'
miRNA:   3'- caGCCGCGGaa-UUuaCGGg-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 133108 0.75 0.47739
Target:  5'- -cCGGCGCCgccgc-GCCCggCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 71696 0.75 0.486956
Target:  5'- -gUGGCGCa---GAUGCCCGcCCCGCa -3'
miRNA:   3'- caGCCGCGgaauUUACGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 120892 0.74 0.526071
Target:  5'- gGUCGGgGCCgc--GUGCCgAcCCCGCg -3'
miRNA:   3'- -CAGCCgCGGaauuUACGGgUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 370 0.74 0.536039
Target:  5'- cUCGGcCGCCgccg--GCgCAUCCCGCg -3'
miRNA:   3'- cAGCC-GCGGaauuuaCGgGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1886 0.74 0.546073
Target:  5'- --gGGCGCCcgg---GCCCcgCCCGCg -3'
miRNA:   3'- cagCCGCGGaauuuaCGGGuaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.