miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 110 0.68 0.863911
Target:  5'- -gCGcGCGCCccg---GCCCGUCCCucGCg -3'
miRNA:   3'- caGC-CGCGGaauuuaCGGGUAGGG--CG- -5'
21547 5' -54.9 NC_004812.1 + 113 0.69 0.805758
Target:  5'- -gCGGgGCCggGAGcccGCCCGggagCCCGCc -3'
miRNA:   3'- caGCCgCGGaaUUUa--CGGGUa---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 147 0.68 0.849058
Target:  5'- -gUGGCGCCgcgccgccgcGCCCGcggCCCGCc -3'
miRNA:   3'- caGCCGCGGaauuua----CGGGUa--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 370 0.74 0.536039
Target:  5'- cUCGGcCGCCgccg--GCgCAUCCCGCg -3'
miRNA:   3'- cAGCC-GCGGaauuuaCGgGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 533 0.68 0.871422
Target:  5'- -cCGcGCGCCcgg---GCCC-UCCCGCc -3'
miRNA:   3'- caGC-CGCGGaauuuaCGGGuAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 558 0.71 0.696765
Target:  5'- ---cGCGCCgcgcgacgcccGCCCGUCCCGCg -3'
miRNA:   3'- cagcCGCGGaauuua-----CGGGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 719 0.66 0.923286
Target:  5'- cGUCGGCGCCg-----GCgCGgucgCCgGCg -3'
miRNA:   3'- -CAGCCGCGGaauuuaCGgGUa---GGgCG- -5'
21547 5' -54.9 NC_004812.1 + 1015 0.67 0.885785
Target:  5'- -cCGGgGCCgcgcccccgcGAggGCCCGgccgCCCGCg -3'
miRNA:   3'- caGCCgCGGaa--------UUuaCGGGUa---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1221 0.68 0.856187
Target:  5'- -gCGGCGCCgcGGggGCUCcucCCCGCc -3'
miRNA:   3'- caGCCGCGGaaUUuaCGGGua-GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1251 0.71 0.689643
Target:  5'- -gCGGCGCCgcGGccGCCCGUuggUCCGCc -3'
miRNA:   3'- caGCCGCGGaaUUuaCGGGUA---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1308 0.67 0.919925
Target:  5'- --gGGCGCCgacccccggGCCCcgCCgCGCc -3'
miRNA:   3'- cagCCGCGGaauuua---CGGGuaGG-GCG- -5'
21547 5' -54.9 NC_004812.1 + 1363 0.66 0.943458
Target:  5'- -cCGGCuaugcaaacGCCgugcgcGAcgGCCCGcCCCGCg -3'
miRNA:   3'- caGCCG---------CGGaa----UUuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1675 0.77 0.387434
Target:  5'- -gCGGCGCCgcg---GCCCG-CCCGCg -3'
miRNA:   3'- caGCCGCGGaauuuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1737 0.73 0.576504
Target:  5'- -cCGcGCGCCUccGcgGCCCGagCCCGCg -3'
miRNA:   3'- caGC-CGCGGAauUuaCGGGUa-GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1886 0.74 0.546073
Target:  5'- --gGGCGCCcgg---GCCCcgCCCGCg -3'
miRNA:   3'- cagCCGCGGaauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 2202 0.7 0.787581
Target:  5'- cUCGcG-GCCUUGGAgccccgGCCCggCCCGCc -3'
miRNA:   3'- cAGC-CgCGGAAUUUa-----CGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 2621 0.68 0.848256
Target:  5'- cGUUGGCGCCgcg---GCCCAgg-CGCg -3'
miRNA:   3'- -CAGCCGCGGaauuuaCGGGUaggGCG- -5'
21547 5' -54.9 NC_004812.1 + 2920 0.77 0.404528
Target:  5'- -aCGGCGCCggcGAagGCCagGUCCCGCg -3'
miRNA:   3'- caGCCGCGGaa-UUuaCGGg-UAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 3175 0.68 0.878716
Target:  5'- gGUCGGCGaCCUg----GCgCAUCCagGCg -3'
miRNA:   3'- -CAGCCGC-GGAauuuaCGgGUAGGg-CG- -5'
21547 5' -54.9 NC_004812.1 + 3242 0.68 0.863911
Target:  5'- -cCGGCGCCcgccagGGGcGCCCGcgccCCCGCc -3'
miRNA:   3'- caGCCGCGGaa----UUUaCGGGUa---GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.