miRNA display CGI


Results 1 - 20 of 1123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 3' -66.6 NC_004812.1 + 108935 0.66 0.423977
Target:  5'- gCGGGUuuCCcCCUCUACGUGGaGCgGCGCa -3'
miRNA:   3'- -GUCCGu-GGcGGGGGUGCGCC-CG-CGCG- -5'
21582 3' -66.6 NC_004812.1 + 115469 0.66 0.432242
Target:  5'- uGGGC-UCGCCgCgCGCGUGcGGCcGCGCc -3'
miRNA:   3'- gUCCGuGGCGGgG-GUGCGC-CCG-CGCG- -5'
21582 3' -66.6 NC_004812.1 + 30897 0.66 0.423977
Target:  5'- -cGGCcCCGCgCCC-CGCGGGCa--- -3'
miRNA:   3'- guCCGuGGCGgGGGuGCGCCCGcgcg -5'
21582 3' -66.6 NC_004812.1 + 141192 0.66 0.423977
Target:  5'- -cGGUugCGCUcgCCCGCGUuccGGCGgGCg -3'
miRNA:   3'- guCCGugGCGG--GGGUGCGc--CCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 98368 0.66 0.423977
Target:  5'- aGGGCGCCagguacggGUCCUCGgGCGGcGCG-GCg -3'
miRNA:   3'- gUCCGUGG--------CGGGGGUgCGCC-CGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 118418 0.66 0.423977
Target:  5'- aCGGGCgacagGCgGCCUCaCACGCGGcCGcCGCc -3'
miRNA:   3'- -GUCCG-----UGgCGGGG-GUGCGCCcGC-GCG- -5'
21582 3' -66.6 NC_004812.1 + 74955 0.66 0.423977
Target:  5'- --cGCGCCGCggUCA-GCGGGUGCGCc -3'
miRNA:   3'- gucCGUGGCGggGGUgCGCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 5791 0.66 0.423977
Target:  5'- -cGGCGcCCGCCUCgGgcugcggggcUGCGGG-GCGCg -3'
miRNA:   3'- guCCGU-GGCGGGGgU----------GCGCCCgCGCG- -5'
21582 3' -66.6 NC_004812.1 + 153583 0.66 0.423977
Target:  5'- uGGGCaACCGCCUCU--GCGGGCcCGa -3'
miRNA:   3'- gUCCG-UGGCGGGGGugCGCCCGcGCg -5'
21582 3' -66.6 NC_004812.1 + 32086 0.66 0.432242
Target:  5'- gGGGC-CCgGCCCcggaggucgCCugGUGGGCcaugGCGCc -3'
miRNA:   3'- gUCCGuGG-CGGG---------GGugCGCCCG----CGCG- -5'
21582 3' -66.6 NC_004812.1 + 26589 0.66 0.432242
Target:  5'- cCAGGaGCgGCCUCagcuCGCGGGCGaCGg -3'
miRNA:   3'- -GUCCgUGgCGGGGgu--GCGCCCGC-GCg -5'
21582 3' -66.6 NC_004812.1 + 32552 0.66 0.423977
Target:  5'- gCGGGCgcagcuggccGCgGCCCCCcagcacacGCGCaGGGCG-GCc -3'
miRNA:   3'- -GUCCG----------UGgCGGGGG--------UGCG-CCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 18095 0.66 0.423977
Target:  5'- cCGGGcCGCCGCa--CACGCGGaCGaCGCg -3'
miRNA:   3'- -GUCC-GUGGCGgggGUGCGCCcGC-GCG- -5'
21582 3' -66.6 NC_004812.1 + 153339 0.66 0.474922
Target:  5'- cCGGGCGgCGUCUCCu--CGGGCG-GCg -3'
miRNA:   3'- -GUCCGUgGCGGGGGugcGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 4991 0.66 0.432242
Target:  5'- gGGGgGCCGUgCgCCGCaggGCGGGCGgGg -3'
miRNA:   3'- gUCCgUGGCGgG-GGUG---CGCCCGCgCg -5'
21582 3' -66.6 NC_004812.1 + 124050 0.66 0.423977
Target:  5'- -cGGCGCCGCggCCaACGgGGGagcgGCGCg -3'
miRNA:   3'- guCCGUGGCGggGG-UGCgCCCg---CGCG- -5'
21582 3' -66.6 NC_004812.1 + 67072 0.66 0.423977
Target:  5'- cCGGGU-CCGCCgCCAgGCGGucgaccaccgGCGCGa -3'
miRNA:   3'- -GUCCGuGGCGGgGGUgCGCC----------CGCGCg -5'
21582 3' -66.6 NC_004812.1 + 154368 0.66 0.423977
Target:  5'- -cGGaCcCCGCCgCCGCGCcGcGCGUGCg -3'
miRNA:   3'- guCC-GuGGCGGgGGUGCGcC-CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 8047 0.66 0.423977
Target:  5'- -cGGCACC-CCCCgGCGCccggccGGCcCGCg -3'
miRNA:   3'- guCCGUGGcGGGGgUGCGc-----CCGcGCG- -5'
21582 3' -66.6 NC_004812.1 + 139612 0.66 0.423977
Target:  5'- gAGGCucugacuCCGCgCCCCGgaGCGGG-GgGCg -3'
miRNA:   3'- gUCCGu------GGCG-GGGGUg-CGCCCgCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.