miRNA display CGI

Results 1 - 20 of 1123 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21582	3'	-66.6	NC_004812.1	+	78298	0.78	0.072524
	Target:  5'- cCGGGCccuCCGCCCCCGCcCcGGCGUGCg -3' miRNA:   3'- -GUCCGu--GGCGGGGGUGcGcCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	130843	0.79	0.057909
	Target:  5'- gGGGCGCCGCCCgggguCgGCGgGGGCGCGg -3' miRNA:   3'- gUCCGUGGCGGG-----GgUGCgCCCGCGCg -5'
21582	3'	-66.6	NC_004812.1	+	6359	0.79	0.05938
	Target:  5'- gCAGGCgcGCCGCCCgCCagggACGCGGGCaGCGUu -3' miRNA:   3'- -GUCCG--UGGCGGG-GG----UGCGCCCG-CGCG- -5'
21582	3'	-66.6	NC_004812.1	+	71051	0.79	0.05938
	Target:  5'- aGGGCgGCCGCCCCUGCGgcgguuCGGGCgGCGCg -3' miRNA:   3'- gUCCG-UGGCGGGGGUGC------GCCCG-CGCG- -5'
21582	3'	-66.6	NC_004812.1	+	133035	0.79	0.062276
	Target:  5'- gCGGcGCGCCGCCCCUcccgcccacucggGgGCGGGCGCGg -3' miRNA:   3'- -GUC-CGUGGCGGGGG-------------UgCGCCCGCGCg -5'
21582	3'	-66.6	NC_004812.1	+	155584	0.79	0.065635
	Target:  5'- gCGGGCgGCCggGCCCUCGCGgGGGCGCGg -3' miRNA:   3'- -GUCCG-UGG--CGGGGGUGCgCCCGCGCg -5'
21582	3'	-66.6	NC_004812.1	+	152858	0.79	0.065635
	Target:  5'- -cGGCGCCGCCgCgCCGCuGCuGGCGCGCg -3' miRNA:   3'- guCCGUGGCGG-G-GGUG-CGcCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	117111	0.78	0.067296
	Target:  5'- gAGGCGCgGCCUCCGgGC-GGCGCGCc -3' miRNA:   3'- gUCCGUGgCGGGGGUgCGcCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	30838	0.78	0.071984
	Target:  5'- cCAGGCGCCGCCCgggggcgcgcccggCCAUggggggccgaGgGGGCGCGCu -3' miRNA:   3'- -GUCCGUGGCGGG--------------GGUG----------CgCCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	142142	0.79	0.057763
	Target:  5'- aGGGCcCCGCCCCCGCGCccuccggccacacGGGCGC-Ca -3' miRNA:   3'- gUCCGuGGCGGGGGUGCG-------------CCCGCGcG- -5'
21582	3'	-66.6	NC_004812.1	+	135989	0.8	0.055071
	Target:  5'- -cGGaCGCCGCCCCCGagacgcaguCGCaGGCGCGCg -3' miRNA:   3'- guCC-GUGGCGGGGGU---------GCGcCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	76368	0.8	0.049796
	Target:  5'- -cGGcCGCCGCCCCCaggGCGcCGaGGCGCGCg -3' miRNA:   3'- guCC-GUGGCGGGGG---UGC-GC-CCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	104685	0.85	0.020977
	Target:  5'- aCAGGUcccacagcuggGCCGCCgCCAUGCGGGCGUGCg -3' miRNA:   3'- -GUCCG-----------UGGCGGgGGUGCGCCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	73242	0.84	0.025736
	Target:  5'- gCGGGCGgcCCGCCCCCAgGCGGGCcgccagcaGCGCg -3' miRNA:   3'- -GUCCGU--GGCGGGGGUgCGCCCG--------CGCG- -5'
21582	3'	-66.6	NC_004812.1	+	122212	0.84	0.026401
	Target:  5'- uGGGCGCCGCCCCgGgGgCGGGCGCGg -3' miRNA:   3'- gUCCGUGGCGGGGgUgC-GCCCGCGCg -5'
21582	3'	-66.6	NC_004812.1	+	25898	0.83	0.033205
	Target:  5'- -cGGCGcCCGCgCCCAgcgcCGCGGGCGCGCg -3' miRNA:   3'- guCCGU-GGCGgGGGU----GCGCCCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	8330	0.82	0.036757
	Target:  5'- -cGGCGCCGCCgCCGCGCugccGGGCGCGg -3' miRNA:   3'- guCCGUGGCGGgGGUGCG----CCCGCGCg -5'
21582	3'	-66.6	NC_004812.1	+	66125	0.82	0.03867
	Target:  5'- gCAGGCGCCGCCgCCGCGCaggauGGUGUGCa -3' miRNA:   3'- -GUCCGUGGCGGgGGUGCGc----CCGCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	27475	0.82	0.03867
	Target:  5'- --aGCGCCGCCCCgGCGCGGaGgGCGCa -3' miRNA:   3'- gucCGUGGCGGGGgUGCGCC-CgCGCG- -5'
21582	3'	-66.6	NC_004812.1	+	95572	0.81	0.041724
	Target:  5'- gCGGGCuaaccgcacgGCCGCgCCCgCGCGCGGGCGCGg -3' miRNA:   3'- -GUCCG----------UGGCG-GGG-GUGCGCCCGCGCg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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