miRNA display CGI


Results 1 - 20 of 1123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 3' -66.6 NC_004812.1 + 4 0.76 0.097591
Target:  5'- cCGGGC-CCuCCCCCG-GCGGcGCGCGCg -3'
miRNA:   3'- -GUCCGuGGcGGGGGUgCGCC-CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 78 0.7 0.274171
Target:  5'- cCGGGCGg-GCUCCCGgGCGGGCucccggccccGCGCg -3'
miRNA:   3'- -GUCCGUggCGGGGGUgCGCCCG----------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 120 0.71 0.219182
Target:  5'- -cGGC-CCGUCCCU-CGCGaGuGCGCGCg -3'
miRNA:   3'- guCCGuGGCGGGGGuGCGC-C-CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 148 0.7 0.250948
Target:  5'- -uGGCGCCGCgCCgCCGCGCccgcGGCccgccGCGCg -3'
miRNA:   3'- guCCGUGGCG-GG-GGUGCGc---CCG-----CGCG- -5'
21582 3' -66.6 NC_004812.1 + 221 0.67 0.391887
Target:  5'- gGGGgGCCcaagGCUCCCGCG-GGGCccaaggcucccGCGCg -3'
miRNA:   3'- gUCCgUGG----CGGGGGUGCgCCCG-----------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 394 0.74 0.137132
Target:  5'- -cGGCGCCccgcCCCCCACGCGcGcaggccuuccGCGCGCg -3'
miRNA:   3'- guCCGUGGc---GGGGGUGCGC-C----------CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 441 0.67 0.384115
Target:  5'- --cGCGCgCGCCCgCCGCGagccCGGGCcgccgGCGCg -3'
miRNA:   3'- gucCGUG-GCGGG-GGUGC----GCCCG-----CGCG- -5'
21582 3' -66.6 NC_004812.1 + 451 0.67 0.391887
Target:  5'- -cGGCcCCGgUCCCGCGCGuccCGCGCc -3'
miRNA:   3'- guCCGuGGCgGGGGUGCGCcc-GCGCG- -5'
21582 3' -66.6 NC_004812.1 + 510 0.66 0.440601
Target:  5'- -cGGcCGCCGCggCCgGgGCGGGCccGCGCg -3'
miRNA:   3'- guCC-GUGGCGg-GGgUgCGCCCG--CGCG- -5'
21582 3' -66.6 NC_004812.1 + 541 0.75 0.124532
Target:  5'- cCGGGCccucCCGCCUCC-CGCcccGGCGCGCg -3'
miRNA:   3'- -GUCCGu---GGCGGGGGuGCGc--CCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 585 0.69 0.299084
Target:  5'- -cGGCGCgGCCCCCGgcCcCGGGCGUc- -3'
miRNA:   3'- guCCGUGgCGGGGGU--GcGCCCGCGcg -5'
21582 3' -66.6 NC_004812.1 + 588 0.69 0.312184
Target:  5'- gCGGGCGCgGCUCCgguaGCGCGGacccgauccGCcGCGCg -3'
miRNA:   3'- -GUCCGUGgCGGGGg---UGCGCC---------CG-CGCG- -5'
21582 3' -66.6 NC_004812.1 + 720 0.72 0.180954
Target:  5'- cCGGGCGCCGgCCCCGCcccuccccucccccGCcGcGCGCGCc -3'
miRNA:   3'- -GUCCGUGGCgGGGGUG--------------CGcC-CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 728 0.66 0.474047
Target:  5'- -cGGCGCgGUCgCCgGCGgGGGUgggggcgGCGCg -3'
miRNA:   3'- guCCGUGgCGG-GGgUGCgCCCG-------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 795 0.67 0.39976
Target:  5'- uGGGcCGCCGCCCCCGcCGCcgcccGGC-CGg -3'
miRNA:   3'- gUCC-GUGGCGGGGGU-GCGc----CCGcGCg -5'
21582 3' -66.6 NC_004812.1 + 847 0.67 0.395024
Target:  5'- aGGGCcCCGCgcgugUCCC-CGCGGccgcgagccccgcccGCGCGCg -3'
miRNA:   3'- gUCCGuGGCG-----GGGGuGCGCC---------------CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 1017 0.74 0.133876
Target:  5'- gGGGC-CgCGCCCCCGCGaGGGCccggccgcccGCGCg -3'
miRNA:   3'- gUCCGuG-GCGGGGGUGCgCCCG----------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 1222 0.76 0.107635
Target:  5'- -cGGCGCCGCgggggcuccuCCCCGCcCGGGCgGCGCc -3'
miRNA:   3'- guCCGUGGCG----------GGGGUGcGCCCG-CGCG- -5'
21582 3' -66.6 NC_004812.1 + 1258 0.67 0.376445
Target:  5'- --cGCgGCCGCCCguugguccgCCGgcCGCGGGCGgGCg -3'
miRNA:   3'- gucCG-UGGCGGG---------GGU--GCGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 1307 0.72 0.204625
Target:  5'- gGGGCGCCGaCCCCCGgGCcccGCcGCGCc -3'
miRNA:   3'- gUCCGUGGC-GGGGGUgCGcc-CG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.