miRNA display CGI


Results 1 - 20 of 1123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 3' -66.6 NC_004812.1 + 20322 1.1 0.000313
Target:  5'- gCAGGCACCGCCCCCACGCGGGCGCGCg -3'
miRNA:   3'- -GUCCGUGGCGGGGGUGCGCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 77249 0.87 0.015824
Target:  5'- gGGGCGCUGCCCUCGCGgGGGCGcCGCu -3'
miRNA:   3'- gUCCGUGGCGGGGGUGCgCCCGC-GCG- -5'
21582 3' -66.6 NC_004812.1 + 104685 0.85 0.020977
Target:  5'- aCAGGUcccacagcuggGCCGCCgCCAUGCGGGCGUGCg -3'
miRNA:   3'- -GUCCG-----------UGGCGGgGGUGCGCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 73242 0.84 0.025736
Target:  5'- gCGGGCGgcCCGCCCCCAgGCGGGCcgccagcaGCGCg -3'
miRNA:   3'- -GUCCGU--GGCGGGGGUgCGCCCG--------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 153113 0.84 0.026401
Target:  5'- uGGGCGCCGCCCCgGgGgCGGGCGCGg -3'
miRNA:   3'- gUCCGUGGCGGGGgUgC-GCCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 122212 0.84 0.026401
Target:  5'- uGGGCGCCGCCCCgGgGgCGGGCGCGg -3'
miRNA:   3'- gUCCGUGGCGGGGgUgC-GCCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 105050 0.83 0.032371
Target:  5'- gAGGCGCCGCUCCgGcCGCGGGCGCa- -3'
miRNA:   3'- gUCCGUGGCGGGGgU-GCGCCCGCGcg -5'
21582 3' -66.6 NC_004812.1 + 25898 0.83 0.033205
Target:  5'- -cGGCGcCCGCgCCCAgcgcCGCGGGCGCGCg -3'
miRNA:   3'- guCCGU-GGCGgGGGU----GCGCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 54613 0.82 0.036664
Target:  5'- -cGGCGCCGCgagucgcgcgaccCCCCGCGCGGGCG-GCg -3'
miRNA:   3'- guCCGUGGCG-------------GGGGUGCGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 39231 0.82 0.036757
Target:  5'- -cGGCGCCGCCgCCGCGCugccGGGCGCGg -3'
miRNA:   3'- guCCGUGGCGGgGGUGCG----CCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 8330 0.82 0.036757
Target:  5'- -cGGCGCCGCCgCCGCGCugccGGGCGCGg -3'
miRNA:   3'- guCCGUGGCGGgGGUGCG----CCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 27475 0.82 0.03867
Target:  5'- --aGCGCCGCCCCgGCGCGGaGgGCGCa -3'
miRNA:   3'- gucCGUGGCGGGGgUGCGCC-CgCGCG- -5'
21582 3' -66.6 NC_004812.1 + 66125 0.82 0.03867
Target:  5'- gCAGGCGCCGCCgCCGCGCaggauGGUGUGCa -3'
miRNA:   3'- -GUCCGUGGCGGgGGUGCGc----CCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 136451 0.81 0.040681
Target:  5'- -cGGCACCGCaggcgaaUCCGCGCGGGgGCGCc -3'
miRNA:   3'- guCCGUGGCGg------GGGUGCGCCCgCGCG- -5'
21582 3' -66.6 NC_004812.1 + 95572 0.81 0.041724
Target:  5'- gCGGGCuaaccgcacgGCCGCgCCCgCGCGCGGGCGCGg -3'
miRNA:   3'- -GUCCG----------UGGCG-GGG-GUGCGCCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 47292 0.81 0.042149
Target:  5'- -cGGCGCCGCCUCCagcGCcgccggcgcguacguGCGGGCGCGCa -3'
miRNA:   3'- guCCGUGGCGGGGG---UG---------------CGCCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 132797 0.81 0.046165
Target:  5'- cCGGGuCGCCG-CCCCGCGC-GGCGCGCa -3'
miRNA:   3'- -GUCC-GUGGCgGGGGUGCGcCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 76368 0.8 0.049796
Target:  5'- -cGGcCGCCGCCCCCaggGCGcCGaGGCGCGCg -3'
miRNA:   3'- guCC-GUGGCGGGGG---UGC-GC-CCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 135989 0.8 0.055071
Target:  5'- -cGGaCGCCGCCCCCGagacgcaguCGCaGGCGCGCg -3'
miRNA:   3'- guCC-GUGGCGGGGGU---------GCGcCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 142142 0.79 0.057763
Target:  5'- aGGGCcCCGCCCCCGCGCccuccggccacacGGGCGC-Ca -3'
miRNA:   3'- gUCCGuGGCGGGGGUGCG-------------CCCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.