Results 1 - 20 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 48 | 0.67 | 0.501062 |
Target: 5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3' miRNA: 3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 125 | 0.68 | 0.435969 |
Target: 5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3' miRNA: 3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 713 | 0.66 | 0.60749 |
Target: 5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3' miRNA: 3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 1292 | 0.67 | 0.501062 |
Target: 5'- aGGGUCCC--CGgAGGCGggGCGCCGa -3' miRNA: 3'- -CUCAGGGucGCgUCCGCgaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 1479 | 0.69 | 0.395383 |
Target: 5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3' miRNA: 3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 1998 | 0.66 | 0.558377 |
Target: 5'- cGGGUCCCgccggcGGuCGCucgGGGCGCcGaCGCCGGc -3' miRNA: 3'- -CUCAGGG------UC-GCG---UCCGCGaC-GCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 2231 | 0.71 | 0.291796 |
Target: 5'- cGG-CCCAGCGCAcgcgcGGCGCgGCGgCGGg -3' miRNA: 3'- cUCaGGGUCGCGU-----CCGCGaCGCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 2363 | 0.71 | 0.298439 |
Target: 5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3' miRNA: 3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 2428 | 0.69 | 0.411998 |
Target: 5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3' miRNA: 3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3240 | 0.67 | 0.500127 |
Target: 5'- ---aCCCGGCGCccgccagGGGCGCccGCGCCc- -3' miRNA: 3'- cucaGGGUCGCG-------UCCGCGa-CGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3287 | 0.67 | 0.517062 |
Target: 5'- cGAGg-CCAGCGCGcgcgggucgaaggcGaGCGCggcGCGCCAGg -3' miRNA: 3'- -CUCagGGUCGCGU--------------C-CGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3424 | 0.66 | 0.568127 |
Target: 5'- uGGGcCCCGGCgGCA--CGCgGCGCCAGc -3' miRNA: 3'- -CUCaGGGUCG-CGUccGCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3524 | 0.66 | 0.558377 |
Target: 5'- cGGcCCCgGGgGCGGGgcCGCgGCGCCGGg -3' miRNA: 3'- cUCaGGG-UCgCGUCC--GCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3728 | 0.73 | 0.231655 |
Target: 5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3' miRNA: 3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3837 | 0.75 | 0.173622 |
Target: 5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3' miRNA: 3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3893 | 0.67 | 0.519908 |
Target: 5'- cAG-CCagaGGCGCGGGCGCggcgGCGCg-- -3' miRNA: 3'- cUCaGGg--UCGCGUCCGCGa---CGCGguc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 4629 | 0.71 | 0.319775 |
Target: 5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3' miRNA: 3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 4800 | 0.67 | 0.539025 |
Target: 5'- cGAGggCUGGUGCGGGCGCgGgGUCGGc -3' miRNA: 3'- -CUCagGGUCGCGUCCGCGaCgCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 5119 | 0.66 | 0.547707 |
Target: 5'- gGGGUCCgGgGgGCGGGCGCggagGCgggagggccgcggGCCAGa -3' miRNA: 3'- -CUCAGGgU-CgCGUCCGCGa---CG-------------CGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 5385 | 0.68 | 0.464322 |
Target: 5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3' miRNA: 3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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