miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 13323 0.78 0.194712
Target:  5'- cGCCGGGggucgggggugcgGCGGUcccUUCCGCGCCGGGGg -3'
miRNA:   3'- uCGGCCU-------------UGUCA---AGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 18372 0.7 0.531978
Target:  5'- cGCCGGGcccGCGGgcCCCACAUcguccaggCGGGGg -3'
miRNA:   3'- uCGGCCU---UGUCaaGGGUGUG--------GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 37195 0.7 0.531978
Target:  5'- cGGCCagggGGAGCGGcgCCCccggGCACgCGGGGg -3'
miRNA:   3'- -UCGG----CCUUGUCaaGGG----UGUG-GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 105227 0.66 0.803405
Target:  5'- cGGCCGGcGCc--UCCCACuGCUGGGcGUa -3'
miRNA:   3'- -UCGGCCuUGucaAGGGUG-UGGCCC-CA- -5'
21585 5' -59.1 NC_004812.1 + 154696 0.74 0.341135
Target:  5'- cGGCCGGAGCcucggCCCAUAUaCGGGGUg -3'
miRNA:   3'- -UCGGCCUUGucaa-GGGUGUG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 73638 0.73 0.380008
Target:  5'- uGCUGGAGCAGUUCgagCACACCGuccGGGa -3'
miRNA:   3'- uCGGCCUUGUCAAGg--GUGUGGC---CCCa -5'
21585 5' -59.1 NC_004812.1 + 76946 0.73 0.388131
Target:  5'- gGGCgGGGGCGaugguguuuuucGUUCCCGCcggGCCGGGGc -3'
miRNA:   3'- -UCGgCCUUGU------------CAAGGGUG---UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 118336 0.73 0.396366
Target:  5'- cGCCGGAGCAGUUUgCGCgGCCGGa-- -3'
miRNA:   3'- uCGGCCUUGUCAAGgGUG-UGGCCcca -5'
21585 5' -59.1 NC_004812.1 + 39142 0.72 0.430408
Target:  5'- cGGCCGGGcCGGggguccgCCCccggggGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCUuGUCaa-----GGG------UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 49530 0.7 0.529079
Target:  5'- cGCCGGuagacccgaacccccCAGUUCCCcucuCGCUGGGGg -3'
miRNA:   3'- uCGGCCuu-------------GUCAAGGGu---GUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 12135 0.72 0.457035
Target:  5'- cGuuGGu-CAcGUUCCCGCGCUGGGGc -3'
miRNA:   3'- uCggCCuuGU-CAAGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 61070 0.72 0.421736
Target:  5'- cGCCGGGGCgcgacgccccGGgccgCCC-CGCCGGGGUc -3'
miRNA:   3'- uCGGCCUUG----------UCaa--GGGuGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 13362 0.76 0.266042
Target:  5'- nGGUCGGGggugcgGCGGUcccUUCCGCGCCGGGGg -3'
miRNA:   3'- -UCGGCCU------UGUCA---AGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 105708 0.72 0.466105
Target:  5'- uGGCgGGGcCGGggCCCcgaACACCGGGGc -3'
miRNA:   3'- -UCGgCCUuGUCaaGGG---UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 105773 0.75 0.312165
Target:  5'- cGGCgGGGauccACAGUagcUCCCGuCGCCGGGGg -3'
miRNA:   3'- -UCGgCCU----UGUCA---AGGGU-GUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 13576 0.73 0.413171
Target:  5'- cGCCGGAGCgAGUUUCC---CCGGGGg -3'
miRNA:   3'- uCGGCCUUG-UCAAGGGuguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 105634 0.72 0.466105
Target:  5'- gGGcCCGGAAaca---CCACGCCGGGGUa -3'
miRNA:   3'- -UC-GGCCUUgucaagGGUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 145822 0.7 0.531978
Target:  5'- cGGCgGGGuCGGcggCCCACGCCcGGGGa -3'
miRNA:   3'- -UCGgCCUuGUCaa-GGGUGUGG-CCCCa -5'
21585 5' -59.1 NC_004812.1 + 101178 0.74 0.339641
Target:  5'- cGGCgGGGACGGUcguggacaaccgCgCCGCGCCGGGGg -3'
miRNA:   3'- -UCGgCCUUGUCAa-----------G-GGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 31420 0.73 0.380008
Target:  5'- cGGCCGGGGCGGgcCCgCGCGCCcGGGc -3'
miRNA:   3'- -UCGGCCUUGUCaaGG-GUGUGGcCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.