miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 5' -53.4 NC_004812.1 + 95514 0.66 0.977212
Target:  5'- gGGGCgccgccucgaccccgGCG-GGGCGgcccGggGcgUCGCGCc -3'
miRNA:   3'- -CCCGa--------------CGCaCUCGCa---CuuCa-AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 10121 0.66 0.976969
Target:  5'- cGGCcugGCGUucAGCGUGAGGcccggUACGCc -3'
miRNA:   3'- cCCGa--CGCAc-UCGCACUUCaa---GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 30442 0.66 0.976969
Target:  5'- cGGGgUGCGaaccugGGGCG-GAAGg--ACGCa -3'
miRNA:   3'- -CCCgACGCa-----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 155950 0.66 0.976969
Target:  5'- cGGGgUGCGaaccugGGGCG-GAAGg--ACGCa -3'
miRNA:   3'- -CCCgACGCa-----CUCGCaCUUCaagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 21066 0.66 0.976969
Target:  5'- cGGGCUGaCGUcgGGGCG-GAGGUacuucucCACGa -3'
miRNA:   3'- -CCCGAC-GCA--CUCGCaCUUCAa------GUGCg -5'
21602 5' -53.4 NC_004812.1 + 146354 0.66 0.975977
Target:  5'- cGGCUGCGUcgcGGCGUucguccucgUCGCGCu -3'
miRNA:   3'- cCCGACGCAc--UCGCAcuuca----AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 144418 0.66 0.974431
Target:  5'- cGGC-GCGacGGCGgcucgGAAGUUCcCGCg -3'
miRNA:   3'- cCCGaCGCacUCGCa----CUUCAAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 89047 0.66 0.974431
Target:  5'- aGGGCcgGCGUGgcGGCGgcgaGAGcugcugCACGCg -3'
miRNA:   3'- -CCCGa-CGCAC--UCGCac--UUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 146947 0.66 0.974431
Target:  5'- cGGGCU-CGUGgguccguccgGGCGgggugGGAGUggGCGCu -3'
miRNA:   3'- -CCCGAcGCAC----------UCGCa----CUUCAagUGCG- -5'
21602 5' -53.4 NC_004812.1 + 120045 0.66 0.974431
Target:  5'- cGGCaacGUGgaccUGGGCGUGggGUaCACGg -3'
miRNA:   3'- cCCGa--CGC----ACUCGCACuuCAaGUGCg -5'
21602 5' -53.4 NC_004812.1 + 96808 0.66 0.974431
Target:  5'- cGGGCgaacccgcGCGUaGAGgGUGAGGgcgC-CGCc -3'
miRNA:   3'- -CCCGa-------CGCA-CUCgCACUUCaa-GuGCG- -5'
21602 5' -53.4 NC_004812.1 + 110760 0.66 0.972814
Target:  5'- gGGGCguuacgacgcGCGaUGGGgGUGggGgacacgguggaggcgUUCGCGCu -3'
miRNA:   3'- -CCCGa---------CGC-ACUCgCACuuC---------------AAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 40083 0.66 0.971696
Target:  5'- cGGGCgGCGggcggcGGGCG-GccGggCGCGCg -3'
miRNA:   3'- -CCCGaCGCa-----CUCGCaCuuCaaGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 91406 0.66 0.971696
Target:  5'- cGGC--CGUGAGCacGAAG-UCGCGCa -3'
miRNA:   3'- cCCGacGCACUCGcaCUUCaAGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 74357 0.66 0.971696
Target:  5'- gGGGCgcggGCGcGGGCGgcGggGUcccgccCGCGCc -3'
miRNA:   3'- -CCCGa---CGCaCUCGCa-CuuCAa-----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 81917 0.66 0.971696
Target:  5'- aGGGCgaacGCGaucGAGCGgggGAGGUagGCGg -3'
miRNA:   3'- -CCCGa---CGCa--CUCGCa--CUUCAagUGCg -5'
21602 5' -53.4 NC_004812.1 + 100149 0.66 0.971696
Target:  5'- cGGGCgGCG-GGGCG-GGGcucaUCGCGCc -3'
miRNA:   3'- -CCCGaCGCaCUCGCaCUUca--AGUGCG- -5'
21602 5' -53.4 NC_004812.1 + 87258 0.66 0.971696
Target:  5'- aGGGCUcGaCGaUGAGCugGUGGAGcagcugCGCGCc -3'
miRNA:   3'- -CCCGA-C-GC-ACUCG--CACUUCaa----GUGCG- -5'
21602 5' -53.4 NC_004812.1 + 50290 0.66 0.971411
Target:  5'- cGGGuCUGCGcggGGGCGagGAcgacggccuggauGGUUC-CGCg -3'
miRNA:   3'- -CCC-GACGCa--CUCGCa-CU-------------UCAAGuGCG- -5'
21602 5' -53.4 NC_004812.1 + 100448 0.66 0.968757
Target:  5'- cGGGCUGUacgccaucaGcGAGC-UGcGGUUCugGCu -3'
miRNA:   3'- -CCCGACG---------CaCUCGcACuUCAAGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.