miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 3' -56.9 NC_004812.1 + 127978 0.66 0.840949
Target:  5'- cGGAAGUccgGGgCGCCgGCGGCGGcGGCc- -3'
miRNA:   3'- -UUUUCAa--CCgGCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 142182 0.66 0.81528
Target:  5'- ---cGUUGGCgCGCUGgcCGGCGcgGGGCUGg -3'
miRNA:   3'- uuuuCAACCG-GCGGC--GCCGC--UUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 140355 0.66 0.806369
Target:  5'- -uGGG-UGGCCGCgGCGGUGAccuaccucAGCc- -3'
miRNA:   3'- uuUUCaACCGGCGgCGCCGCU--------UCGau -5'
21606 3' -56.9 NC_004812.1 + 149140 0.66 0.832579
Target:  5'- ------cGGCCGCCGgGGCGc-GCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCgCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 147245 0.66 0.832579
Target:  5'- cGAAGUucaUGGCCGCCGUGcGCcacGGCc- -3'
miRNA:   3'- uUUUCA---ACCGGCGGCGC-CGcu-UCGau -5'
21606 3' -56.9 NC_004812.1 + 131012 0.66 0.82402
Target:  5'- ---cGgcGGCgGCCGCGGgGAAgGCg- -3'
miRNA:   3'- uuuuCaaCCGgCGGCGCCgCUU-CGau -5'
21606 3' -56.9 NC_004812.1 + 93459 0.66 0.814397
Target:  5'- -cGAGgaGGCCGCgGCGGCucccccucccccgGggGCc- -3'
miRNA:   3'- uuUUCaaCCGGCGgCGCCG-------------CuuCGau -5'
21606 3' -56.9 NC_004812.1 + 113057 0.66 0.831731
Target:  5'- ------cGGCCggcgucgGCCGCGGCGGcAGCg- -3'
miRNA:   3'- uuuucaaCCGG-------CGGCGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 109710 0.66 0.83003
Target:  5'- ---cGgcGGCCGCCGCGcccgaccccggggcGCuGggGCUGc -3'
miRNA:   3'- uuuuCaaCCGGCGGCGC--------------CG-CuuCGAU- -5'
21606 3' -56.9 NC_004812.1 + 92717 0.66 0.849123
Target:  5'- -cAGGUguuucuGCCGCUGgGGCGcGAGCUGu -3'
miRNA:   3'- uuUUCAac----CGGCGGCgCCGC-UUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 123110 0.66 0.840949
Target:  5'- gGAGAGUccgGuGCCGUCgGCGGCGGcGGCg- -3'
miRNA:   3'- -UUUUCAa--C-CGGCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 115581 0.66 0.806369
Target:  5'- cGAAGacGGCUuCCGCGGCGGgcggcgGGCUGu -3'
miRNA:   3'- uUUUCaaCCGGcGGCGCCGCU------UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 80052 0.66 0.832579
Target:  5'- --cGGggGGUCGCUGcCGGCcGAGGCc- -3'
miRNA:   3'- uuuUCaaCCGGCGGC-GCCG-CUUCGau -5'
21606 3' -56.9 NC_004812.1 + 5907 0.66 0.82402
Target:  5'- ------gGGCCGCCG-GGCGGcaGGCa- -3'
miRNA:   3'- uuuucaaCCGGCGGCgCCGCU--UCGau -5'
21606 3' -56.9 NC_004812.1 + 16218 0.66 0.849123
Target:  5'- ------gGGCCGCgCGCcggaGGCGGAGCc- -3'
miRNA:   3'- uuuucaaCCGGCG-GCG----CCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 149657 0.66 0.840949
Target:  5'- gAAGGGggGGCgCGaaaCGgGGCGggGUUGu -3'
miRNA:   3'- -UUUUCaaCCG-GCg--GCgCCGCuuCGAU- -5'
21606 3' -56.9 NC_004812.1 + 45631 0.66 0.82402
Target:  5'- cGGGGacGGCCGCgcugccCGCGGCGAuAGCg- -3'
miRNA:   3'- uUUUCaaCCGGCG------GCGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 103955 0.66 0.832579
Target:  5'- --uAGagGGCCGCCGgGGgGAccggaacggggGGCUGc -3'
miRNA:   3'- uuuUCaaCCGGCGGCgCCgCU-----------UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 77096 0.66 0.803663
Target:  5'- -uGAGcUUGGCgGCCGCcauggccuuggccuGGUGGAGCg- -3'
miRNA:   3'- uuUUC-AACCGgCGGCG--------------CCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 32568 0.66 0.852336
Target:  5'- ---cGUUGGCCgcggcgccgcggcccGcCCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCAACCGG---------------C-GGCGCCGCuuCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.