Results 1 - 20 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21606 | 3' | -56.9 | NC_004812.1 | + | 37133 | 0.72 | 0.466018 |
Target: 5'- ---cGUcGGCCGCCGCGGCGcaGAGgaGg -3' miRNA: 3'- uuuuCAaCCGGCGGCGCCGC--UUCgaU- -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 130770 | 0.74 | 0.4023 |
Target: 5'- -cGAGUcGGCCGCCGCGGCcccGCg- -3' miRNA: 3'- uuUUCAaCCGGCGGCGCCGcuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 129651 | 0.73 | 0.419944 |
Target: 5'- gAGAGGgcGGCCGCCagGCGGCGcuGCg- -3' miRNA: 3'- -UUUUCaaCCGGCGG--CGCCGCuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 36148 | 0.73 | 0.428939 |
Target: 5'- -cGGGUUGGCCGUgGCGGCGcagGGGUg- -3' miRNA: 3'- uuUUCAACCGGCGgCGCCGC---UUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 6860 | 0.73 | 0.428939 |
Target: 5'- -cGAGgcGGcCCGCCgGgGGCGGAGCUGa -3' miRNA: 3'- uuUUCaaCC-GGCGG-CgCCGCUUCGAU- -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 71048 | 0.73 | 0.438047 |
Target: 5'- gGGAGGgcGGCCGCCccuGCGGCGGuucgGGCg- -3' miRNA: 3'- -UUUUCaaCCGGCGG---CGCCGCU----UCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 117178 | 0.73 | 0.438047 |
Target: 5'- --cGGgcGGUCGCCGCGGCGAccgggauaaaaGGCa- -3' miRNA: 3'- uuuUCaaCCGGCGGCGCCGCU-----------UCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 122299 | 0.73 | 0.438047 |
Target: 5'- --cGGagGGCCGCCGgGGgGAGGCg- -3' miRNA: 3'- uuuUCaaCCGGCGGCgCCgCUUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 154155 | 0.73 | 0.438047 |
Target: 5'- ------cGGacuuCCGCCGCGGCGAGGCg- -3' miRNA: 3'- uuuucaaCC----GGCGGCGCCGCUUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 113456 | 0.74 | 0.4023 |
Target: 5'- ------gGGCCGCCGCGGUGucGCg- -3' miRNA: 3'- uuuucaaCCGGCGGCGCCGCuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 130472 | 0.74 | 0.393657 |
Target: 5'- --cGGgcGGCCgGCgGCGGCGAGGCg- -3' miRNA: 3'- uuuUCaaCCGG-CGgCGCCGCUUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 18362 | 0.74 | 0.393657 |
Target: 5'- ------cGGCCGCCGCGGCGuacGCg- -3' miRNA: 3'- uuuucaaCCGGCGGCGCCGCuu-CGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 103614 | 0.81 | 0.15695 |
Target: 5'- cAGAAGUUGGCCaGCaCGCGGCGGuAGCUc -3' miRNA: 3'- -UUUUCAACCGG-CG-GCGCCGCU-UCGAu -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 510 | 0.78 | 0.241326 |
Target: 5'- ------cGGCCGCCGCGGCcGggGCg- -3' miRNA: 3'- uuuucaaCCGGCGGCGCCG-CuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 142299 | 0.77 | 0.247315 |
Target: 5'- cGAGGgccccgGGCCGgCGCGGCGggGCg- -3' miRNA: 3'- uUUUCaa----CCGGCgGCGCCGCuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 112716 | 0.75 | 0.352289 |
Target: 5'- gAGAGGgcGGCCgGCCGCGGCcGGGCg- -3' miRNA: 3'- -UUUUCaaCCGG-CGGCGCCGcUUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 39546 | 0.74 | 0.368461 |
Target: 5'- cGGGGUgcgGGCCGUCGCGgGCGAugagcGGCUGg -3' miRNA: 3'- uUUUCAa--CCGGCGGCGC-CGCU-----UCGAU- -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 93542 | 0.74 | 0.368461 |
Target: 5'- cGGAGggGGCCGUgGgGGCGGAGCc- -3' miRNA: 3'- uUUUCaaCCGGCGgCgCCGCUUCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 97116 | 0.74 | 0.385134 |
Target: 5'- cGGGGGccGcGCCGCCGCGGCGgcGCg- -3' miRNA: 3'- -UUUUCaaC-CGGCGGCGCCGCuuCGau -5' |
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21606 | 3' | -56.9 | NC_004812.1 | + | 32151 | 0.74 | 0.393657 |
Target: 5'- ------gGGCCcccGCCGCGGCGggGCg- -3' miRNA: 3'- uuuucaaCCGG---CGGCGCCGCuuCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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