miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 3' -56.9 NC_004812.1 + 45 0.69 0.689367
Target:  5'- --cGGcgGGCCGCgggCGCGGCGgcGCg- -3'
miRNA:   3'- uuuUCaaCCGGCG---GCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 510 0.78 0.241326
Target:  5'- ------cGGCCGCCGCGGCcGggGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCG-CuuCGau -5'
21606 3' -56.9 NC_004812.1 + 1130 0.68 0.729974
Target:  5'- cAGAAGccGGCCGCCaggcuccccgGCGGCGcGAGCc- -3'
miRNA:   3'- -UUUUCaaCCGGCGG----------CGCCGC-UUCGau -5'
21606 3' -56.9 NC_004812.1 + 1667 0.66 0.852336
Target:  5'- ---cGUUGGCCgcggcgccgcggcccGcCCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCAACCGG---------------C-GGCGCCGCuuCgau -5'
21606 3' -56.9 NC_004812.1 + 2139 0.7 0.606362
Target:  5'- -cGGGgaGGCC-CCGCgGGCGggGCUc -3'
miRNA:   3'- uuUUCaaCCGGcGGCG-CCGCuuCGAu -5'
21606 3' -56.9 NC_004812.1 + 2397 0.67 0.797294
Target:  5'- -cAGGUagacgGGCCGCaGCGGCGcGGCc- -3'
miRNA:   3'- uuUUCAa----CCGGCGgCGCCGCuUCGau -5'
21606 3' -56.9 NC_004812.1 + 2470 0.66 0.840949
Target:  5'- cGGAAGUccgGGgCGCCgGCGGCGGcGGCc- -3'
miRNA:   3'- -UUUUCAa--CCgGCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 2621 0.67 0.788065
Target:  5'- ---cGUUGG-CGCCGCGGCccAGGCg- -3'
miRNA:   3'- uuuuCAACCgGCGGCGCCGc-UUCGau -5'
21606 3' -56.9 NC_004812.1 + 2876 0.68 0.739932
Target:  5'- -cGAGgcGGCgGCCgGCGGCGGcGGCg- -3'
miRNA:   3'- uuUUCaaCCGgCGG-CGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 3063 0.69 0.657324
Target:  5'- aGGAAGgagaGGCCGCCGCGcGCGucgguccAGGCg- -3'
miRNA:   3'- -UUUUCaa--CCGGCGGCGC-CGC-------UUCGau -5'
21606 3' -56.9 NC_004812.1 + 3262 0.67 0.759544
Target:  5'- -cGGGcgGGCCGCagcgCGCGGCG-AGCg- -3'
miRNA:   3'- uuUUCaaCCGGCG----GCGCCGCuUCGau -5'
21606 3' -56.9 NC_004812.1 + 3870 0.71 0.524541
Target:  5'- ------cGGCCGCCGCGGCccgcAAGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCGc---UUCGau -5'
21606 3' -56.9 NC_004812.1 + 4047 0.67 0.788065
Target:  5'- ---cGgcGGCgGCCGCGGCGucGUc- -3'
miRNA:   3'- uuuuCaaCCGgCGGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 4142 0.73 0.419944
Target:  5'- gAGAGGgcGGCCGCCagGCGGCGcuGCg- -3'
miRNA:   3'- -UUUUCaaCCGGCGG--CGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 4233 0.67 0.788065
Target:  5'- cGGGGgcGGCgGCgGCGGCGGcGGCg- -3'
miRNA:   3'- uUUUCaaCCGgCGgCGCCGCU-UCGau -5'
21606 3' -56.9 NC_004812.1 + 4964 0.74 0.393657
Target:  5'- --cGGgcGGCCgGCgGCGGCGAGGCg- -3'
miRNA:   3'- uuuUCaaCCGG-CGgCGCCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 5262 0.74 0.4023
Target:  5'- -cGAGUcGGCCGCCGCGGCcccGCg- -3'
miRNA:   3'- uuUUCAaCCGGCGGCGCCGcuuCGau -5'
21606 3' -56.9 NC_004812.1 + 5504 0.66 0.82402
Target:  5'- ---cGgcGGCgGCCGCGGgGAAgGCg- -3'
miRNA:   3'- uuuuCaaCCGgCGGCGCCgCUU-CGau -5'
21606 3' -56.9 NC_004812.1 + 5907 0.66 0.82402
Target:  5'- ------gGGCCGCCG-GGCGGcaGGCa- -3'
miRNA:   3'- uuuucaaCCGGCGGCgCCGCU--UCGau -5'
21606 3' -56.9 NC_004812.1 + 5951 0.68 0.708791
Target:  5'- cAGGGGgcagGGCCcggggagGCCGCGGgGggGCg- -3'
miRNA:   3'- -UUUUCaa--CCGG-------CGGCGCCgCuuCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.