miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 3' -56.9 NC_004812.1 + 40124 1.04 0.003845
Target:  5'- cAAAAGUUGGCCGCCGCGGCGAAGCUAu -3'
miRNA:   3'- -UUUUCAACCGGCGGCGCCGCUUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 81181 0.88 0.046669
Target:  5'- ------cGGCCGCCGCGGCGGAGCUGg -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCGCUUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 100337 0.82 0.127285
Target:  5'- -cGAGcgGGCCGCCGCgGGCGAGGCg- -3'
miRNA:   3'- uuUUCaaCCGGCGGCG-CCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 103614 0.81 0.15695
Target:  5'- cAGAAGUUGGCCaGCaCGCGGCGGuAGCUc -3'
miRNA:   3'- -UUUUCAACCGG-CG-GCGCCGCU-UCGAu -5'
21606 3' -56.9 NC_004812.1 + 59485 0.8 0.165288
Target:  5'- gGAGAGgcGcGCCGCCGCGGCGgcGCg- -3'
miRNA:   3'- -UUUUCaaC-CGGCGGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 137569 0.78 0.213176
Target:  5'- ------cGGCCGCCGCGGCcgaGAGGCUGc -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCG---CUUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 510 0.78 0.241326
Target:  5'- ------cGGCCGCCGCGGCcGggGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCG-CuuCGau -5'
21606 3' -56.9 NC_004812.1 + 31411 0.78 0.241326
Target:  5'- ------cGGCCGCCGCGGCcGggGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCG-CuuCGau -5'
21606 3' -56.9 NC_004812.1 + 142299 0.77 0.247315
Target:  5'- cGAGGgccccgGGCCGgCGCGGCGggGCg- -3'
miRNA:   3'- uUUUCaa----CCGGCgGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 98779 0.77 0.272508
Target:  5'- -cGAGUgGGCCGCCGaGGCGgcGCUGa -3'
miRNA:   3'- uuUUCAaCCGGCGGCgCCGCuuCGAU- -5'
21606 3' -56.9 NC_004812.1 + 51775 0.75 0.344393
Target:  5'- cAAGAGccagaccGCCGCCGCGGCGAagaAGCUGc -3'
miRNA:   3'- -UUUUCaac----CGGCGGCGCCGCU---UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 112716 0.75 0.352289
Target:  5'- gAGAGGgcGGCCgGCCGCGGCcGGGCg- -3'
miRNA:   3'- -UUUUCaaCCGG-CGGCGCCGcUUCGau -5'
21606 3' -56.9 NC_004812.1 + 93542 0.74 0.368461
Target:  5'- cGGAGggGGCCGUgGgGGCGGAGCc- -3'
miRNA:   3'- uUUUCaaCCGGCGgCgCCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 39546 0.74 0.368461
Target:  5'- cGGGGUgcgGGCCGUCGCGgGCGAugagcGGCUGg -3'
miRNA:   3'- uUUUCAa--CCGGCGGCGC-CGCU-----UCGAU- -5'
21606 3' -56.9 NC_004812.1 + 97116 0.74 0.385134
Target:  5'- cGGGGGccGcGCCGCCGCGGCGgcGCg- -3'
miRNA:   3'- -UUUUCaaC-CGGCGGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 100939 0.74 0.385134
Target:  5'- gGAGAGcugGGCCGaCGUGGCGggGCg- -3'
miRNA:   3'- -UUUUCaa-CCGGCgGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 4964 0.74 0.393657
Target:  5'- --cGGgcGGCCgGCgGCGGCGAGGCg- -3'
miRNA:   3'- uuuUCaaCCGG-CGgCGCCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 18362 0.74 0.393657
Target:  5'- ------cGGCCGCCGCGGCGuacGCg- -3'
miRNA:   3'- uuuucaaCCGGCGGCGCCGCuu-CGau -5'
21606 3' -56.9 NC_004812.1 + 32151 0.74 0.393657
Target:  5'- ------gGGCCcccGCCGCGGCGggGCg- -3'
miRNA:   3'- uuuucaaCCGG---CGGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 130472 0.74 0.393657
Target:  5'- --cGGgcGGCCgGCgGCGGCGAGGCg- -3'
miRNA:   3'- uuuUCaaCCGG-CGgCGCCGCUUCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.