Results 1 - 20 of 1515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21606 | 5' | -63.5 | NC_004812.1 | + | 95124 | 0.65 | 0.642442 |
Target: 5'- gGCGGCUCugGGgGCGGaccgucccggGGCCcuacaaaGCCCg -3' miRNA: 3'- gCGCUGGGugUCgCGCUg---------CCGG-------CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 127284 | 0.65 | 0.641481 |
Target: 5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA: 3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 100803 | 0.65 | 0.642442 |
Target: 5'- uCG-GGCCCGaagaccucguucuCGGCGCuGACgaccgcggGGCUGCCCa -3' miRNA: 3'- -GCgCUGGGU-------------GUCGCG-CUG--------CCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 1776 | 0.65 | 0.641481 |
Target: 5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA: 3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 121228 | 0.65 | 0.642442 |
Target: 5'- aCGUGGCCCACGaguccuuugccacGgGgGGCG-UCGCCCc -3' miRNA: 3'- -GCGCUGGGUGU-------------CgCgCUGCcGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 26280 | 0.65 | 0.641481 |
Target: 5'- gCGCGGgugcCCCGCGGCGacaggggaaggucgGgggucggcgggguucGCGGCCGCUCg -3' miRNA: 3'- -GCGCU----GGGUGUCGCg-------------C---------------UGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 24035 | 0.65 | 0.642442 |
Target: 5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA: 3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 44641 | 0.65 | 0.64052 |
Target: 5'- cCGCGGCCCcuucuccgaccccgGCGGgGcCGACucGCCGCgCg -3' miRNA: 3'- -GCGCUGGG--------------UGUCgC-GCUGc-CGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 149544 | 0.65 | 0.642442 |
Target: 5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA: 3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 49837 | 0.66 | 0.585863 |
Target: 5'- gCGCGcCCCGCuc--CGAC-GCCGCCCc -3' miRNA: 3'- -GCGCuGGGUGucgcGCUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 126437 | 0.66 | 0.585863 |
Target: 5'- gCGCGccgaGCCCGCcGCGCGcuccCGGCUguggagGCCUa -3' miRNA: 3'- -GCGC----UGGGUGuCGCGCu---GCCGG------CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 19984 | 0.66 | 0.585863 |
Target: 5'- gGCGAUCgACAccucggcaaagcGCGCGGCG-CCGUCUc -3' miRNA: 3'- gCGCUGGgUGU------------CGCGCUGCcGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 151810 | 0.66 | 0.585863 |
Target: 5'- gGCGccuucuacGCCCGCuacCGCGACGGguaCGCCa -3' miRNA: 3'- gCGC--------UGGGUGuc-GCGCUGCCg--GCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 56428 | 0.66 | 0.585863 |
Target: 5'- uGCGGUCCGCcaGGCGCcgGGCGaucGUCGCCCc -3' miRNA: 3'- gCGCUGGGUG--UCGCG--CUGC---CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 138972 | 0.66 | 0.585863 |
Target: 5'- gGCGACCgAagcccCGGCacCGACGGCggagcgguuCGCCCg -3' miRNA: 3'- gCGCUGGgU-----GUCGc-GCUGCCG---------GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 91526 | 0.66 | 0.585863 |
Target: 5'- cCGgGGCCUGCGGaCGCGAgccCGcGuCCGCCg -3' miRNA: 3'- -GCgCUGGGUGUC-GCGCU---GC-C-GGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 130644 | 0.66 | 0.585863 |
Target: 5'- gGCcGCCCggggACGGCgGCGuCGGCCcgcgguccggGCCCg -3' miRNA: 3'- gCGcUGGG----UGUCG-CGCuGCCGG----------CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 137073 | 0.66 | 0.585863 |
Target: 5'- uCGCGAUCCACcGCGCccuGAC-GCCggGCUCg -3' miRNA: 3'- -GCGCUGGGUGuCGCG---CUGcCGG--CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 50069 | 0.66 | 0.585863 |
Target: 5'- cCGCG-CCCGCugcgagguggGGCGCGugcUGGCCGUg- -3' miRNA: 3'- -GCGCuGGGUG----------UCGCGCu--GCCGGCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 37457 | 0.66 | 0.585863 |
Target: 5'- gCGUGGuccagUCCGCGGgGCGguACGGCCGgUCg -3' miRNA: 3'- -GCGCU-----GGGUGUCgCGC--UGCCGGCgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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